BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471253
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11180.2 | Symbols: | Secretory carrier membrane protein (S... 1153 0.0
AT1G61250.1 | Symbols: SC3 | secretory carrier 3 | chr1:2258589... 885 0.0
> AT1G11180.2 | Symbols: | Secretory carrier membrane protein
(SCAMP) family protein | chr1:3745783-3748500 FORWARD LENGTH=1154
Length=1154
Score = 1153 bits (624), Expect = 0.0
Identities = 703/741 (95%), Gaps = 6/741 (1%)
Strand=Plus/Plus
Query 204 ACAGGATTTGaaaaa-aaaGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAGCTAAGACGAA 262
||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 265 ACAGGATTTGAAAAAGAAA-GAGAAGGAGCTCCAAGCCAAAGAAGCTGACCTAAGACGAC 323
Query 263 GAGAGCAGGATCTCAAACGGAAAGAGGATGCTGCTGCACGAGCCGGAATTGTTATCGAGG 322
||||||| ||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 324 GAGAGCAAGATCTTAAACGAAAACAGGATGCTGCTGCCCGAGCCGGAATTGTTATCGAGG 383
Query 323 CGAAAAACTGGCC-ACCCTTCTTCCCACTTATCCACCATGACATTGCAAATGAAATTCCT 381
| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 384 CAAAAAACTGGCCTA-CCTTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATT-CT 441
Query 382 -GTTCGGCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTCTTGC 440
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 442 GGTTCGTCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTCTCGC 501
Query 441 ACTTTTCTGGAATATCATCGCTGTTACTACTGCTTGGATCAAAGGAGAAGGAGTAACAAT 500
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 502 ACTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAGAAGGAGTAACAAT 561
Query 501 TTGGCTTCTCGCCATTATTTACTTCATATCGGGTGTCCCAGGAGGCTATGTGTTATGGTA 560
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 562 TTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTA 621
Query 561 TCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTT 681
Query 621 GTTCTACATGCTCCACATACTTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTATTGTCTT 680
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 682 GTTCTACATGCTCCACATACTTTTCTGCCTCTTTGCTGCAGTTGCTCCTCCTATTGTCTT 741
Query 681 CAAAGGAAAATCACTTGCGGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCATT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CAAAGGAAAATCACTTGCGGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCATT 801
Query 741 GGTCGGGATCTTCTACTTCATCGGGTTTGGGTTATTCTGCCTTGAATCAGTGGTCAGCAT 800
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 802 GGTCGGGATCTTCTACTTCATTGGGTTTGGGTTATTCTGTCTTGAATCAGTGGTTAGCAT 861
Query 801 CTGGGTTATTCAGCAAGTATACATGTACTTCCGAGGAAGCGGGAAAGCGGATGAGATGAG 860
||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 862 CTGGGTTATACAGCAAGTATACATGTACTTCAGAGGAAGCGGAAAAGCGGATGATATGAG 921
Query 861 ACAGGATGCTGCAAGAGGAGCCATGAGAGCTGCCATATGAGAAAAATGTGAATCAATGAT 920
|| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 922 ACGGGATGCTGCAAGAGGAGCCATGAGAGCTGCCATATGAGGCAAATGTAAATCAATGAG 981
Query 921 TGTAGTCATCTCTTCTGAAGC 941
| |||||||||||||| ||||
Sbjct 982 TCTAGTCATCTCTTCTTAAGC 1002
Score = 285 bits (154), Expect = 5e-76
Identities = 197/216 (91%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 1 GTTGTGAAATCGAGAGATAAGCTTTGGTTAACCATGGCTGGTCGTTACGATCGTAACCCA 60
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||
Sbjct 14 GTTGTGAAATCGAGAGATAAGCTTTGGTAAACCATGGGTGGTCGTTACGATCGGAACACA 73
Query 61 TTCGACGAACAAGATGAAGTCAATCCTTTTGCTAACCCTGGGAGTGTTCCCGCTGCTTCG 120
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 74 TTCGACGAACAAGACGAAGTCAATCCTTTTGCTAATCCTGGGAGTGTTCCTGCTGCTTCG 133
Query 121 AATTCCAGATTATCGCCTTTGCCTCCCGAACCTGCTGGTTTTGGTTATGGT-G-AC---- 174
||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 134 AATTCCAGACTATCGCCTTTGCCTCCCGAACCTGCTGGTTTTGGTTATGGTCGTACTGTT 193
Query 175 -A--TTCCTCTTGACAGACCTGGGTCTGGTACACAG 207
| |||||||||||||||| ||||||||| |||||
Sbjct 194 GACATTCCTCTTGACAGACCAGGGTCTGGTGCACAG 229
> AT1G61250.1 | Symbols: SC3 | secretory carrier 3 | chr1:22585899-22588905
FORWARD LENGTH=1247
Length=1247
Score = 885 bits (479), Expect = 0.0
Identities = 752/879 (86%), Gaps = 37/879 (4%)
Strand=Plus/Plus
Query 32 CCATGGCTGGTCGTTACGATCGTAACCCATTCGAC-GAACAAGATGAAGTCAATCCTTTT 90
|||||||| |||||| |||| || || |||| | || |||| ||||||||||||||
Sbjct 135 CCATGGCTAATCGTTATGATCCAAATCCTTTCG-CTGAGGAAGAAGAAGTCAATCCTTTC 193
Query 91 GCTAACCCTGGGA-GTGTTCC-CGCTGCTTCGAATTCCAGA-TTATCGCCTTTGCCTCCC 147
||||| || || | ||||| | |||| |||||||| ||| || ||||||||||||||
Sbjct 194 GCTAATGCT-AGAGGAGTTCCAC-CTGCGTCGAATTCGAGACTT-TCGCCTTTGCCTCCA 250
Query 148 GAACCTGCTGGTTTTGGTTA---T-G----GT-GACATTCCTCTTGACAGACCTGGGTCT 198
|| |||| |||||| | ||| | | || |||||||||||||||||| | ||
Sbjct 251 GAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGA-----G-CT 304
Query 199 GGTACACAGGATTTGaa-aaaaaaGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAGCTAAG 257
||||||||||||||||| || ||| |||||||| || ||||||||||||||||||||||
Sbjct 305 GGTACACAGGATTTGAAGAAGAAA-GAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAAA 363
Query 258 ACGAAGAGAGCAGGATCTCAAACGGAAAGAGGATGCTGCTGCACGAGCCGGAATTGTTAT 317
|||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 364 ACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTAT 423
Query 318 CGAGGCGAAAAACTGGCCACCCTTCTTCCCACTTATCCACCATGACATTGCAAATGAAAT 377
|| | |||||||||||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 424 TGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAAT 483
Query 378 TCCTGTTCGGCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTC- 436
||| |||| |||||||| ||||||||| || | |||||||| ||||||||||||||||
Sbjct 484 TCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTCT 543
Query 437 TTGCACTTTTCTGGAATATCATCGCTGTTACTACTGCTTGGATCAAAGGAGAAGGAGTAA 496
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 544 TTG-TCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 602
Query 497 CAATTTGGCTTCTCGCCATT-ATTTACTTCATATCGGGTGTCCCAGGAGGCTATGTGTTA 555
| || |||||||| ||| || |||||||||||| ||||||| ||||||||||||||||||
Sbjct 603 CGATATGGCTTCTTGCC-TTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTA 661
Query 556 TGGTATCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTT 615
|||||||| || ||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 662 TGGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTT 721
Query 616 TTCTTGTTCTACATGCTCCACA-TACTTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTAT 674
||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||| |
Sbjct 722 TTCTTGTTCTATATGCTCCACATTGC-TTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGT 780
Query 675 TGTCTTCAAAGGAAAATCACTTGC-GGGCATATTACCTGCAATAGATGTGTTGAGCGCTC 733
||||||||||||||||| ||||| ||| || ||||||||||||||||| || || | ||
Sbjct 781 CGTCTTCAAAGGAAAATCTCTTGCTGGG-ATCTTACCTGCAATAGATGTCTTAAGTGGTC 839
Query 734 AGGCA-TTGGTCGGGATCTTCTACTTCATCGGGTTTGGGTTATTCTGCCTTGAATCAGTG 792
| ||| ||| | ||||| ||||||||||| ||||||| || |||||||| |||||||||
Sbjct 840 AAGCAATTGTT-GGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTG 898
Query 793 GTCAGCATCTGGGTTATTCAGCAAGTATACATGTACTTCCGAGGAAGCGGGAAAGCG-GA 851
|| ||||||||||||||||||||||| || |||||||||||||| ||||||||| | ||
Sbjct 899 GTTAGCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAA-CAAGA 957
Query 852 TGAGATGAGACAGGATGCTGCAAGAGGAGCCATGAGAGC 890
| | ||||||| ||| || || ||||||||| |||||||
Sbjct 958 TCAAATGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGC 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5