BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471254
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11190.1 | Symbols: BFN1, ENDO1 | bifunctional nuclease i | ... 1709 0.0
> AT1G11190.1 | Symbols: BFN1, ENDO1 | bifunctional nuclease i
| chr1:3750066-3752780 REVERSE LENGTH=1274
Length=1274
Score = 1709 bits (925), Expect = 0.0
Identities = 979/1006 (97%), Gaps = 0/1006 (0%)
Strand=Plus/Plus
Query 1 TATCATTATAAAAGTTTCAAAGTTTGAAGATATGGCATCGGCTTTTAGATCATCCACGAG 60
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 54 TATCATTATATAAGTTTCAAACTTTGAAGATATGGCATCGGCTTTTAGATCATCCACGAG 113
Query 61 GTTGATTCCTGTATTAGGTATATTGATTTTGTGTTCGGTTTCTTCTGTCCAAAGCTGGAG 120
|||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 114 GTTGATTCTTGTATTAGGTATACTGATTTTGTGTTCGGTTTCTTCTGTCCGAAGCTGGAG 173
Query 121 CAAAGAAGGTCATATTCTTACATGTAGAATTGCTCAGAATCTTTTAGAAGCCGGACCGGC 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 174 CAAAGAAGGTCATATTCTTACTTGTAGAATTGCTCAGAATCTTTTAGAAGCCGGACCAGC 233
Query 181 ACATGTAGTTGAAAATCTGTTACCGGATTACGTGAAAGGAGATTTATCAGCATTGTGTGT 240
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ACATGTAGTAGAGAATCTGTTACCGGATTACGTGAAAGGAGATTTATCAGCATTGTGTGT 293
Query 241 GTGGCCTGACCAGATCCGACATTGGTACAAGTACCGTTGGACCAGCCATCTCCATTACAT 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 GTGGCCTGACCAGATCCGACATTGGTACAAGTATCGTTGGACCAGCCATCTCCATTACAT 353
Query 301 CGACACTCCCGACCAAGCCTGCTCTTACGAATACTCCAGGGATTGTCATGATCAACATGG 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 354 CGACACTCCCGACCAAGCCTGCTCTTACGAATACTCTAGGGATTGTCATGATCAACATGG 413
Query 361 ATTGAAGGATATGTGTGTGGATGGAGCAATCCAGAATTTCACGTCTCAACTTCAGCATTA 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 414 ATTGAAGGATATGTGTGTGGATGGAGCAATCCAGAATTTCACGTCTCAGCTTCAGCATTA 473
Query 421 CGGTGAAGGAACATCTGATCGTAGATATAACATGACCGAAGCCCTTTTGTTCTTGTCTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CGGTGAAGGAACATCTGATCGTAGATATAACATGACCGAAGCCCTTTTGTTCTTGTCTCA 533
Query 481 TTTCATGGGAGATATTCATCAGCCGATGCATGTGGGATTCACAAGTGATGAAGGAGGAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTTCATGGGAGATATTCATCAGCCGATGCATGTGGGATTCACAAGTGATGAAGGAGGAAA 593
Query 541 CACGATAGATTTACGTTGGTACAAACACAAATCAAATCTACATCATGTATGGGACAGAGA 600
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 594 CACGATAGATTTACGTTGGTACAAACACAAATCCAATCTACATCATGTATGGGATAGAGA 653
Query 601 GATCATTCTCACCGCTCTTAAAGAAAGCTACGACAAGAACTTGGATCTTCTCCAAGAGGA 660
|||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 654 GATCATTCTCACGGCTCTAAAAGAAAACTACGACAAGAACTTGGATCTTCTCCAAGAGGA 713
Query 661 TCTTGAGAAGAACATCACCACTGGATTATGGCACGACGATTTATCTTCGTGGACAGAATG 720
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 714 TCTTGAGAAGAACATCACCAATGGATTATGGCACGACGATCTATCTTCGTGGACAGAATG 773
Query 721 CAACGATCTTATCGCTTGTCCTCACAAGTATGCTTCGGAGAGTATAAAGTTAGCTTGTAA 780
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 774 CAACGATCTTATCGCTTGTCCACACAAGTATGCTTCAGAGAGTATAAAGTTAGCTTGTAA 833
Query 781 ATGGGGCTACAAAGGCGTGAAGTCTGGTGAAACGTTATCAGAGGAATATTTCAATACAAG 840
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 ATGGGGATACAAAGGCGTCAAGTCTGGTGAAACGTTATCAGAAGAATATTTCAATACAAG 893
Query 841 GTTGCCAATAGTGATGAAAAGAATAGTTCAGGGAGGAGTTAGACTAGCCATGATACTAAA 900
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GTTGCCAATAGTGATGAAGAGAATAGTTCAGGGAGGAGTTAGACTAGCCATGATACTAAA 953
Query 901 CCGGGTTTTTAGTGACGATCATGCTATTGCTGGTGTTGCTGCCACTTGAACCAAACCGGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 CCGGGTTTTTAGTGACGATCATGCTATTGCTGGTGTTGCTGCCACTTGAACCAAACCCGA 1013
Query 961 CATACCGGGCCATCAAAGCATTTGATTAAGAGATTATTTGATACAT 1006
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 CATACCGGGGCATCAAAGCATTTGATTAAGAGATTATTTGATACAT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5