BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471255
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11200.1 | Symbols: | Protein of unknown function (DUF300) ... 1411 0.0
> AT1G11200.1 | Symbols: | Protein of unknown function (DUF300)
| chr1:3753365-3755641 FORWARD LENGTH=1153
Length=1153
Score = 1411 bits (764), Expect = 0.0
Identities = 912/981 (93%), Gaps = 20/981 (2%)
Strand=Plus/Plus
Query 2 AGAATGATTGACTTATCTACTCTATCTCCTGCGGAGATCACGGTGATGGGATCTGTGTTC 61
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 81 AGAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCCGTGTTC 140
Query 62 TGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTCGTATCCCAGCATCTGTTTTACTGG 121
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 141 TGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTTGTATCCCAGCATCTGTTTTACTGG 200
Query 122 AAGAACCCTAAAGAACAGAGAGCCATTCTAATTATTGTACTTATGGCTCCTGTTTACGCT 181
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 201 AAGAAACCTAATGAACAGAGAGCCATTCTTATTATTGTGCTTATGGCTCCTGTTTACGCT 260
Query 182 ATCAACTCTTTTGTGGGCTTGTTAGATGCTAAGGGAAGCAAACCTTTCTTCATGTTTCTA 241
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 261 ATCAACTCTTTTGTGGGCTTGTTAGATGCTAAAGGAAGCAAACCTTTCTTCATGTTTCTA 320
Query 242 GACGCCGTTAAGGATTGCTATGAGGCACTCGTCATTGCTAAATTCTTGGCTTTGATGTAT 301
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 321 GACGCCGTTAAGGAATGCTATGAGGCACTTGTCATTGCTAAATTCTTGGCTTTGATGTAT 380
Query 302 AGTTACGTAAACATATCGATGAGCGCAAGGATTATCCCAGATGAAATCAAAGGGAGAGAA 361
||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||
Sbjct 381 AGTTATGTAAACATATCGATGAGTGCACGGATTATCCCAGATGAATTCAAAGGGCGAGAA 440
Query 362 ATCCACCATTCGTTTCCAATGACTCTTTTTGTGCCCCGCACCACGCGTCTGGATTACCTC 421
||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||
Sbjct 441 ATCCACCATTCGTTTCCAATGACTCTTTTCGTGCCCCGTACCACACATCTGGATTACCTC 500
Query 422 ACACTGAAACAGCTCAAGCAATGGACACGGCAATTTTGTATTATCCGCCCAGTGTGTTCC 481
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 501 ACACTGAAACAGCTCAAGCAATGGACATGGCAGTTTTGTATTATCCGCCCAGTGTGTTCC 560
Query 482 ATCTTGATGATAACACTACAGATCCTTGGGATTTATCCAGCGTGGTTGAGCTGGATCTTC 541
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 561 ATCTTGATGATAACATTACAGATCCTTGGGATTTATCCAGTTTGGTTGAGCTGGATCTTC 620
Query 542 ACCGTTATTCTAAACGTGTCGGTTTCCCTGGCGTTGTATTCTTTGGTGAAATTCTACCAT 601
|| | |||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ACTGCTATTCTCAATGTTTCGGTTTCCCTGGCGTTGTATTCTTTGGTGAAATTCTACCAT 680
Query 602 GTTTTTGCCAAAGAGTTGGAGCCTCATAAGCCGCTTACAAAGTTCATGTGCGTCAAAGGG 661
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 681 GTTTTTGCTAAAGAGTTGGAGCCTCATAAGCCTCTTACAAAGTTCATGTGCGTCAAAGGG 740
Query 662 ATAGTCTTCTTCTGCTTTTGGCAGGGAATAGTGCTGGAGATATTGGTGGGATTGGGATTA 721
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 741 ATAGTGTTCTTCTGCTTTTGGCAGGGAATAGTCCTGAAGATATTGGTGGGATTGGGATTA 800
Query 722 ATAAAGTCGCATCATTTCTGGTTGGAGGTGGATCAGCTTGAAGAAGCTCTACAAAACGTG 781
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 801 ATTAAGTCGCATCATTTCTGGTTGGAGGTGGATCAGCTTGAAGAAGCTCTGCAAAATGTG 860
Query 782 CTTGTGTGTCTTGAGATGATCGTCTTCTCCATCATTCAACAATACGCTTTTCACGTTGCG 841
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 861 CTTGTATGTCTTGAGATGATCGTCTTCTCCATCATTCAACAGTACGCTTTTCACGTTGCT 920
Query 842 CCTTACAGTGGAGAAACCGAAGCTAAGATGAGAATGAGCAAGAGAGATTAATTCT----- 896
||||||||||||||||| ||||||||||||||| | | ||||||||||| |||||
Sbjct 921 CCTTACAGTGGAGAAACTGAAGCTAAGATGAGATTCAACAAGAGAGATTGATTCTGAGAG 980
Query 897 --C----T-TT-CCAAGTTTAGACCAGAGA---T-TT-TG--CTTCtttttttGGTTAAT 941
| | || |||| ||||||||||||| | || | ||||||||||||||||||
Sbjct 981 TGCAGACTCTTTCCAAATTTAGACCAGAGAAGATCTTATCTTCTTCTTTTTTTGGTTAAT 1040
Query 942 GTGAATGTTATTGATGTTATG 962
|||||||||| || |||||||
Sbjct 1041 GTGAATGTTAATGTTGTTATG 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47069395739
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5