BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471257
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11220.1 | Symbols: | Protein of unknown function (DUF761) ... 1262 0.0
> AT1G11220.1 | Symbols: | Protein of unknown function (DUF761)
| chr1:3759862-3761165 REVERSE LENGTH=1093
Length=1093
Score = 1262 bits (683), Expect = 0.0
Identities = 889/986 (90%), Gaps = 24/986 (2%)
Strand=Plus/Plus
Query 1 ATGGTTTCGTCAATGGTTTCGATCAAGACGGCGCTAATCTCCACCGGAATCGCCGCCTTG 60
||||||||||| ||| ||||||||||| ||||||||||| || ||||||||| ||| ||
Sbjct 1 ATGGTTTCGTCTATGATTTCGATCAAGGCGGCGCTAATCACCGCCGGAATCGTGGCCGTG 60
Query 61 TCTCTGTTTCTGAAGTCCTCTGTTCCTATCGCAGTAGACTTCTCTGTATCACGATTCCCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTGTTTCTGAAGTCCTCTGTTCCTATCGCAGTAGACTTCTCTGTATCACGATTCCCG 120
Query 121 ATCTTTTGGAGTTCCTTTCTCTCGTGGCTGAAACCGCCGTACCTCTTAGTCGTCATCAAC 180
||||||||||| ||||||||||||||||||||||||||||| || || |||| |||||||
Sbjct 121 ATCTTTTGGAGCTCCTTTCTCTCGTGGCTGAAACCGCCGTATCTTTTCGTCGCCATCAAC 180
Query 181 GTCATAATCACTATTATTGTAGCGTCTTCCAAGTATTATCAGAGCATTGGTGACCAAGAT 240
||||||||||| ||||| | || |||||||||| |||||||||| |||| || |||||
Sbjct 181 GTCATAATCACCATTATCATGGCTTCTTCCAAGTTTTATCAGAGCGTTGGAGAGCAAGAC 240
Query 241 GGTGAAGACGACGAGATGATACTCGGTGGCGAATATACGATTCCGAATGTCATCAACCAA 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GGTGAAGACGACGAGATTTTACTCGGTGGCGAATATACGATTCCGAATGTCATCACCCAA 300
Query 301 GCTCCTCCGCAACGACTGGAAGTGACGGATGTGGATCTGGACGCTGATTTCGATTTTGCG 360
||||||||| |||| | || || | | ||||||||||| ||||| ||||||| |
Sbjct 301 GCTCCTCCG---CGAC--G--GT--TGG-T-T-GATCTGGACGCAGATTTTGATTTTGTG 348
Query 361 GCGACAATTCCTTCTCCGATAATCCTCGTTGCGGAGGTGAAGAGATCGGAGGTTGTGTAT 420
||||| ||| || ||| |||||||||||||||||| ||| || |||||| |||| |
Sbjct 349 GCGACGGTTCAGTCGCCG---ATCCTCGTTGCGGAGGTGGAGATATTGGAGGTCGTGTTT 405
Query 421 AAAGAGAAGGAGGA-GGAGGTTTCAGGACTGATCAACGGTGGAGATGAGTTTGCGGTTTT 479
|||||||||| || || | ||||||||| || |||||||||||||||||||||||| |
Sbjct 406 GAAGAGAAGGA-GATGGCGATTTCAGGACAGACCAACGGTGGAGATGAGTTTGCGGTGAT 464
Query 480 GAGATCAGCGTTGAATCAACCGTTATTGGAAGG-ATTGGAGAATCTCCCTCCGGCTGAGA 538
|||||||| ||||||||| ||| || ||| ||| || |||||||| |||||||||||||
Sbjct 465 GAGATCAGAGTTGAATCAGCCGATAATGG-AGGAATCCGAGAATCTGCCTCCGGCTGAGA 523
Query 539 AACCACTGGTTTCGGCTAGATCCGGCCACCGGAAACCGGTCAAAGCGAGTTCAAAAGGCG 598
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 524 AACCACTGGTTTCGGCTAGATCCGGCCACCGGAAACCGATCAAAGCGAGTTCAAAAGGCG 583
Query 599 TTAACAG--AAAA-AAGGCGTTGAGAGTGGTGAAACCGAAGCGGCACGAGACACTGGAGA 655
|||| || |||| |||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 584 TTAATAGAAAAAAGAAGGCGTTGAAAGTGGTGAAACCGAACCGGCACGAGACACTGGAGA 643
Query 656 ACACGTGGAATATGATAACGGAGGAGGGAAAATCTATGCCGTTGACTAGTCATTACCGGA 715
|||||||||| |||||||| |||||||||||||| | |||||||||| ||||||||||||
Sbjct 644 ACACGTGGAACATGATAACTGAGGAGGGAAAATCAACGCCGTTGACTTGTCATTACCGGA 703
Query 716 AAACCAGTATGTCCGGACTTGACGCCGGCGGCGATGTAAAACCTGTCTTGAGGAAAGCAG 775
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 704 AAACCAGTATGTCTGGACTTAACGCCGGCGGCGATGTAAAACCTGTCTTGAGGAAAGCGG 763
Query 776 AGACTTTCAGGGATGTGACTAATTATCGACACTCGTCTCCGACGGTGACGTCGCCGGTGA 835
|||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 764 AGACGTTCAGGGACGTGACTAATTATCGACAGTCGTCTCCGACGGTGACGTCACCGGTGA 823
Query 836 AGATGAAGAAGGAGATGTCGCCGAGTAGGGAGGAGCTGAATCAAAGAGTGGAAGCGTTTA 895
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 824 AGATGAAGAAGGAGATGTCGCCGAGTAGGGAGGAGCTGAATCGAAGAGTAGAAGCGTTTA 883
Query 896 TCAAGAAGTGTAAGGAAGAGAGATTGGAGTCGCTAAAATTGGAGAAA-AACGTGGCTTAA 954
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 884 TCAAGAAGTGTAAGGAAGAGAGATTGGAGTCGCTAAAATTGGAGAAATAA-GTGGCTTAA 942
Query 955 TTAAACACGAGATTAATTAACTTTTT 980
||||||||||||||||||| ||||||
Sbjct 943 TTAAACACGAGATTAATTAGCTTTTT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5