BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471258
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11240.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar... 1026 0.0
> AT1G11240.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar
protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934
proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa
- 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes
- 933 (source: NCBI BLink). | chr1:3766754-3768294
REVERSE LENGTH=867
Length=867
Score = 1026 bits (555), Expect = 0.0
Identities = 627/663 (95%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 1 TTTTGACCTGAGTCGCTTCGTTTCCGATCGGAGGAAGTCTCTGGCGATGAAGGAAGGCTT 60
||||||||||| ||||||||||||||||||||||||| ||||| ||||| || ||||||
Sbjct 37 TTTTGACCTGAACCGCTTCGTTTCCGATCGGAGGAAGTATCTGGTGATGACGGGAGGCTT 96
Query 61 GGATAATGAGGAGGCGGGTTCACTGGCTCCGCCGACCAGCGCTAGGCATATTGGGAAGAG 120
| |||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||
Sbjct 97 GCATAATGAGGAGGCGGGTTCACTGGCTACGCCGACTAGTGCTAGGCACATTGGGAAGAG 156
Query 121 AGCTCGCAAGAACAAAAGCCTCACCGTCTCTTTTGACGAGAAAGATCTCAAGGATTTTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 AGCTCGCAAGAACAAAAGCCTCACCGTCTCTTTTGACGAGAAAGATCTCAAGGATTTTGT 216
Query 181 GACTGGTTTTCACaagaggaagaagaaaagaagaaaggaagctcagaagcagcaggagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GACTGGTTTTCACAAGAGGAAGAAGAAAAGAAGAAAGGAAGCTCAGAAGCAGCAGGAGGA 276
Query 241 agcTTTGAGGCGGAAACGTATCGAGGCCCGTAAGAATAGGAAATTGGAAGAGCTAATGGT 300
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 277 AGCTTTTAGGCGGAAACGAATCGAGGCCCGTAAGAATAGGAAATTGGAAGAGCTAATGGT 336
Query 301 TGCTGGTCATGGCGACGATAATGAAGATGGGGAAGCTGAAGATGAAGAGGATGCAGAGGA 360
||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 337 TGCTGGTAATGGCGAGGATAATGAAGATGGGGAAGCTGAAGATGAAGTGGATGCAGAGGA 396
Query 361 CGAAGAAGCAGAACCTGATGCTTCAACGTCTGGCACGACGATGTATGATACAGGCGAGCT 420
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 397 TGAAGAAGCAGAGCCTGATGCTTCAACATCTGCCACGACGATGTATGATACAGGCGAGTT 456
Query 421 GAAAGTAACTGTGACAACAAGCGCGATATCTTGTGAAGAGGAAGAGCCTATTCGCAAGGA 480
||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 457 GAAAGTAACTGTGACAACAAGTGAGATATCTCGTGAAGAGGAAGAGCCTATTCGCAAGGA 516
Query 481 CAAGACCCAGTCAACAGAATCGGGTTCCACGGCCAAAGCCTCCACAAAGCAGCCTGTGCC 540
||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 517 GAAGACTCAATCAACAGAATCAGGTTCCACGGCCAAAGCTTCCACAAAGCAGCCTGTGCC 576
Query 541 TGTGAGGAAAACCAAACCCATGAAACAGAGCAGGAAACGGTCAAGCACCAAAACTATGAA 600
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 577 TGTGAGGAAAACCAAACCCATGAAACAGAGCAGGAGACGGTCAACCACCAAAACTATGAA 636
Query 601 GAAAAGGGATAAGAAGAAACAAGCAAGAGGGATAAAGACTCCGCGGTAGGAATAGAAATT 660
||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||
Sbjct 637 GAAAAGGGATAAGAAGAAACAAGCAAGAGGGATCAAGACTTCGCGATAGGAGTAGAAATG 696
Query 661 TCT 663
|||
Sbjct 697 TCT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5