BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471262 Length=1062 Score E Sequences producing significant alignments: (Bits) Value AT1G11270.1 | Symbols: | F-box and associated interaction doma... 944 0.0 > AT1G11270.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:3785507-3786990 REVERSE LENGTH=1361 Length=1361 Score = 944 bits (511), Expect = 0.0 Identities = 668/739 (90%), Gaps = 29/739 (4%) Strand=Plus/Plus Query 166 GAACGACAGTTGATCCGTCGTATGCAATCCCGAGGTCCTGATGTTCTTGTAGTGTCCTTT 225 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 431 GAACGACAGTTGATCCGTCGTATGGAGTCCCGAGGTCCTGATGTTCTTGTAGTGTCCTTT 490 Query 226 GCTGATGATAATAATGGTGATGATGAAGCTACGACGGAGAGGAGAA-TTGTGTTTGGTTC 284 ||||||| | ||| ||| ||| || | ||||| | || |||||||||||| Sbjct 491 GCTGATG------A---TGAAGAT-AAG-TATG--GGAGA--A-AAGCTGTGTTTGGTTC 534 Query 285 GTCCATAGTTTCTACGTTCAGATTCCCTACT-TGGAACACCTTGCTCTGCTATGGTAGTT 343 ||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||| Sbjct 535 GTCCATAGTTTCTACGTTCAGATTCCCTACTCT-GCACACCTTGATCTGCTATGGTAGTT 593 Query 344 GTGACGGTCTGGTATGCATCTACTGCT-TTTACTCGCCGAATATCGTGGTGAATCCCGCC 402 |||| |||||| ||||||||||||| | ||||||| |||||||||||||||||||||||| Sbjct 594 GTGAAGGTCTGATATGCATCTACTG-TGTTTACTCACCGAATATCGTGGTGAATCCCGCC 652 Query 403 ACTAAATGGCATCGAAGTTGTCCTCTTTCCAACTTGCAACAGTTCCTC-ATCGACAAATA 461 |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 653 ACTAAATGGCATCGAAGTTGTCCTCTTTCCAACTTGCAACAGTTCCTCGA-CGACAAATT 711 Query 462 TGATAAACAA-GAGTGTGACTTCCCAGA-TCCTAAGCTGGGATTTGGTAAAGACAAACTC 519 ||| ||| || |||| |||||||||| | |||||| || | ||| ||||||||||||||| Sbjct 712 TGA-AAAGAAAGAGTATGACTTCCCA-ACTCCTAAACTTGCATTCGGTAAAGACAAACTC 769 Query 520 AAGGGCACGTTTAAGCCGGTTTGGTTATATAACTCATCCGAGTTTGGCCTCGACAACGTT 579 || ||||| | ||||| ||||||||||||||| |||||||||||| |||||||| ||||| Sbjct 770 AATGGCACATATAAGCAGGTTTGGTTATATAATTCATCCGAGTTTCGCCTCGACGACGTT 829 Query 580 ACCACTTGTGAAGTTTTCGATTTTAGCACCAATGCTTGGAGGTACGTTCATCCTGCTTCT 639 || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 830 ACAACTTGTGAAGTTTTCGATTTTAGCAACAATGCTTGGAGGTACGTTCACCCTGCTTCT 889 Query 640 CCTTATCGGATAAATGATTACCAAGATCCCGTGTATTTTGATGGATCACTTCATTGGCTC 699 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 890 CCTTATCGGATAAATGATTACCAAGATCCCGTGTATTCTGATGGATCAGTTCATTGGCTC 949 Query 700 ACCGAGGGTAAAGAATGCAAGATATTATCTTTTGATCTTCACACTGAAACTTTTCAAGTC 759 |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| Sbjct 950 ACCGAGGGTAAAGAATCCAAGATTTTATCTTTCCATCTTCACACTGAAACTTTTCAAGTC 1009 Query 760 ATATGTAAAGCTCCCTTCCTCTGTGAACGTGACCCTGTCGGCGACACCATGTGCATCCTT 819 ||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||| Sbjct 1010 TTATGTGAAGCTCCCTTCCTCCGTGAACGTGACCCTGTTGGCGACTCCATGTGCATCCTC 1069 Query 820 GATAATCGCTTGTGCGTTTCTGAGATAAACGGTTCC-GCCCAAGTGATATGGTCGTTCGA 878 ||||||||||||||||||||||||||||||||| || |||||| |||||||||| || || Sbjct 1070 GATAATCGCTTGTGCGTTTCTGAGATAAACGGT-CCTGCCCAACTGATATGGTCCTTGGA 1128 Query 879 TTCTTCAGGCGGCAACAAG 897 ||||||||||||||||||| Sbjct 1129 TTCTTCAGGCGGCAACAAG 1147 Score = 219 bits (118), Expect = 6e-56 Identities = 153/169 (91%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 1 ATGTTGAAAAGAGATCGCTCGAGTGTTGTTGAATC-G--A-A-A-AGACATGGCTCCAGT 54 ||||||||||||||| ||||||||||||||| ||| | | | | ||| ||||||||||| Sbjct 215 ATGTTGAAAAGAGATTGCTCGAGTGTTGTTGGATCGGAAAGAGAGAGAGATGGCTCCAGT 274 Query 55 TTGGTTTTGAAAAGACATCGCTCGAGTGTGGTGAAATTGCTGCTACCACACGATGTTGTA 114 |||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 275 TTGGCTTTGAAAAGACATTGCTCTAGTGTGGTGAAATTGCTGCTACCACACGATGTTGTT 334 Query 115 GAGCTCATCCTCGAGAGACTTCCTGTGGAATCTCTGCTGAGGTTCAAGT 163 | ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 335 GGGCTCATCCTCGAGAGACTTCCTGTGGAGTCTCTGCTGAGATTCAAGT 383 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52007764620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5