BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471262
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11270.1 | Symbols: | F-box and associated interaction doma... 944 0.0
> AT1G11270.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:3785507-3786990 REVERSE LENGTH=1361
Length=1361
Score = 944 bits (511), Expect = 0.0
Identities = 668/739 (90%), Gaps = 29/739 (4%)
Strand=Plus/Plus
Query 166 GAACGACAGTTGATCCGTCGTATGCAATCCCGAGGTCCTGATGTTCTTGTAGTGTCCTTT 225
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 431 GAACGACAGTTGATCCGTCGTATGGAGTCCCGAGGTCCTGATGTTCTTGTAGTGTCCTTT 490
Query 226 GCTGATGATAATAATGGTGATGATGAAGCTACGACGGAGAGGAGAA-TTGTGTTTGGTTC 284
||||||| | ||| ||| ||| || | ||||| | || ||||||||||||
Sbjct 491 GCTGATG------A---TGAAGAT-AAG-TATG--GGAGA--A-AAGCTGTGTTTGGTTC 534
Query 285 GTCCATAGTTTCTACGTTCAGATTCCCTACT-TGGAACACCTTGCTCTGCTATGGTAGTT 343
||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||
Sbjct 535 GTCCATAGTTTCTACGTTCAGATTCCCTACTCT-GCACACCTTGATCTGCTATGGTAGTT 593
Query 344 GTGACGGTCTGGTATGCATCTACTGCT-TTTACTCGCCGAATATCGTGGTGAATCCCGCC 402
|||| |||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 594 GTGAAGGTCTGATATGCATCTACTG-TGTTTACTCACCGAATATCGTGGTGAATCCCGCC 652
Query 403 ACTAAATGGCATCGAAGTTGTCCTCTTTCCAACTTGCAACAGTTCCTC-ATCGACAAATA 461
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 653 ACTAAATGGCATCGAAGTTGTCCTCTTTCCAACTTGCAACAGTTCCTCGA-CGACAAATT 711
Query 462 TGATAAACAA-GAGTGTGACTTCCCAGA-TCCTAAGCTGGGATTTGGTAAAGACAAACTC 519
||| ||| || |||| |||||||||| | |||||| || | ||| |||||||||||||||
Sbjct 712 TGA-AAAGAAAGAGTATGACTTCCCA-ACTCCTAAACTTGCATTCGGTAAAGACAAACTC 769
Query 520 AAGGGCACGTTTAAGCCGGTTTGGTTATATAACTCATCCGAGTTTGGCCTCGACAACGTT 579
|| ||||| | ||||| ||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 770 AATGGCACATATAAGCAGGTTTGGTTATATAATTCATCCGAGTTTCGCCTCGACGACGTT 829
Query 580 ACCACTTGTGAAGTTTTCGATTTTAGCACCAATGCTTGGAGGTACGTTCATCCTGCTTCT 639
|| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 830 ACAACTTGTGAAGTTTTCGATTTTAGCAACAATGCTTGGAGGTACGTTCACCCTGCTTCT 889
Query 640 CCTTATCGGATAAATGATTACCAAGATCCCGTGTATTTTGATGGATCACTTCATTGGCTC 699
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 890 CCTTATCGGATAAATGATTACCAAGATCCCGTGTATTCTGATGGATCAGTTCATTGGCTC 949
Query 700 ACCGAGGGTAAAGAATGCAAGATATTATCTTTTGATCTTCACACTGAAACTTTTCAAGTC 759
|||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 950 ACCGAGGGTAAAGAATCCAAGATTTTATCTTTCCATCTTCACACTGAAACTTTTCAAGTC 1009
Query 760 ATATGTAAAGCTCCCTTCCTCTGTGAACGTGACCCTGTCGGCGACACCATGTGCATCCTT 819
||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 1010 TTATGTGAAGCTCCCTTCCTCCGTGAACGTGACCCTGTTGGCGACTCCATGTGCATCCTC 1069
Query 820 GATAATCGCTTGTGCGTTTCTGAGATAAACGGTTCC-GCCCAAGTGATATGGTCGTTCGA 878
||||||||||||||||||||||||||||||||| || |||||| |||||||||| || ||
Sbjct 1070 GATAATCGCTTGTGCGTTTCTGAGATAAACGGT-CCTGCCCAACTGATATGGTCCTTGGA 1128
Query 879 TTCTTCAGGCGGCAACAAG 897
|||||||||||||||||||
Sbjct 1129 TTCTTCAGGCGGCAACAAG 1147
Score = 219 bits (118), Expect = 6e-56
Identities = 153/169 (91%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 1 ATGTTGAAAAGAGATCGCTCGAGTGTTGTTGAATC-G--A-A-A-AGACATGGCTCCAGT 54
||||||||||||||| ||||||||||||||| ||| | | | | ||| |||||||||||
Sbjct 215 ATGTTGAAAAGAGATTGCTCGAGTGTTGTTGGATCGGAAAGAGAGAGAGATGGCTCCAGT 274
Query 55 TTGGTTTTGAAAAGACATCGCTCGAGTGTGGTGAAATTGCTGCTACCACACGATGTTGTA 114
|||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 275 TTGGCTTTGAAAAGACATTGCTCTAGTGTGGTGAAATTGCTGCTACCACACGATGTTGTT 334
Query 115 GAGCTCATCCTCGAGAGACTTCCTGTGGAATCTCTGCTGAGGTTCAAGT 163
| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 335 GGGCTCATCCTCGAGAGACTTCCTGTGGAGTCTCTGCTGAGATTCAAGT 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5