BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471266
Length=2096
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11310.1 | Symbols: MLO2, ATMLO2, PMR2 | Seven transmembrane... 3005 0.0
> AT1G11310.1 | Symbols: MLO2, ATMLO2, PMR2 | Seven transmembrane
MLO family protein | chr1:3800738-3804185 REVERSE LENGTH=2198
Length=2198
Score = 3005 bits (1627), Expect = 0.0
Identities = 1832/1927 (95%), Gaps = 29/1927 (2%)
Strand=Plus/Plus
Query 111 AGAGAGAAGTTAGAGCAAAAGAAGAACACGAAACTCTGACTGCGtctctctctctctctT 170
|||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 165 AGAGAGAAGTTAGATCAAAAGAAGAACACGAAACTCTGACTGTGTCTCTCT-T-TCTCTT 222
Query 171 CGTGTGTTTCTATCTTTATCATTATATATAAAAAGACAAGATCTCTGGTCTGGAAAGAGA 230
|||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 223 CGTGTGTTTCTA----TAT--TTATATATAAAAAGACAAGATCTCTGGTCTGGAATTAGA 276
Query 231 AGAGTCTTATTTGGGGTTTTTTCTTAGGATTAAGCTCTAATGGCA-ACCCAAGTAAAAGA 289
||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 277 AGAATCTTATTTGGGGTTTTTTCTTAGGATTAAGCTCTAATGGCAGA-TCAAGTAAAAGA 335
Query 290 GCGGACTTTAGAGGAGACCTCTACGTGGGCAGTAGCTGTTGTTTGCTTCGTCTTACTATT 349
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 336 GCGGACTTTAGAGGAGACCTCTACGTGGGCAGTTGCTGTTGTTTGCTTTGTCTTACTCTT 395
Query 350 TATTTCGATTGTCCTCGAACATTCGATTAACAAGATTGGAACCTGGTTTAAAAAGAAGCA 409
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 396 TATTTCGATTGTCCTCGAACATTCTATTCACAAAATTGGAACCTGGTTTAAAAAGAAGCA 455
Query 410 CAAGCATGCTCTTTTTGAAGCTCTTGAAAAGGTCAAAGCAGAGCTTATGCTGTTGGGATT 469
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CAAGCAGGCTCTTTTTGAAGCTCTTGAAAAGGTCAAAGCAGAGCTTATGCTGTTGGGATT 515
Query 470 CATATCACTACTGCTCACAGTTGGACAAACACCAATCTCAAATATCTGCATCTCCCAGAA 529
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CATATCACTACTACTCACAATTGGACAAACACCAATCTCAAATATCTGCATCTCCCAGAA 575
Query 530 GGTTGCAAAAACAATGCACCCTTGCAGTGCCGCTGCAGAAGCTGAAAAATACGGCAAGAA 589
||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 576 AGTTGCGTCAACAATGCACCCTTGCAGTGCTGCTGAAGAAGCTAAAAAATACGGCAAGAA 635
Query 590 AGACACCGGAAAG-AA-A-GA---AGATGGAGATAAACCCGGTCGAAGACTTCTTCTTGA 643
|||| |||||||| || | || ||||||||||||||||||||||||||||||||||||
Sbjct 636 AGACGCCGGAAAGAAAGATGATGGAGATGGAGATAAACCCGGTCGAAGACTTCTTCTTGA 695
Query 644 GTTAGCTGACTCTTATATCCATAGAAGAAGTTTAGCCACCAAAGGTTATGACAAATGTGC 703
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 696 GTTAGCTGAATCTTATATCCATAGAAGAAGTTTAGCCACCAAAGGCTATGACAAATGTGC 755
Query 704 AGAGAAGGGGAAAGTGGCTTTTGTATCTGCTTATGGAATCCACCAGCTGCATATATTCAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 AGAGAAGGGGAAAGTGGCTTTTGTATCTGCTTATGGAATCCACCAGCTGCATATATTCAT 815
Query 764 CTTCGTGATCGCGGTTGTTCATGTTATTTACTGCATTGTTACTTATGCTTTCGGAAAGAT 823
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 816 CTTCGTGCTCGCGGTTGTTCATGTTGTTTACTGCATTGTTACTTATGCTTTCGGAAAGAT 875
Query 824 CAAGATGAGAAGGTGGAAGTCGTGGGAGGAGGAGACAAAGACTATAGAGTATCGGTATTC 883
||||||||| | |||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 876 CAAGATGAGGACGTGGAAGTCGTGGGAGGAAGAGACAAAGACAATAGAGTATCAGTATTC 935
Query 884 CAACGATCCTGAGAGGTTCAGGTTTGCGAGGGACACATCTTTTGGGAGAAGACATCTCAA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CAACGATCCTGAGAGGTTCAGGTTTGCGAGGGACACATCTTTTGGGAGAAGACATCTCAA 995
Query 944 TTTCTGGAGCAAGACGAGTA-TTACACTATGGACTGTGTGTTTTTTCAGACAGTTCTTTG 1002
|||||||||||||||||| | | |||||||||| ||| |||||||| |||||||||||||
Sbjct 996 TTTCTGGAGCAAGACGAG-AGTCACACTATGGATTGTTTGTTTTTTTAGACAGTTCTTTG 1054
Query 1003 GATCTGTCACCAAAGTTGATTACTTTGCACTAAGACATGGTTTCATCATGGCGCATTTTG 1062
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1055 GATCTGTCACCAAAGTTGATTACTTAGCACTAAGACATGGTTTCATCATGGCGCATTTTG 1114
Query 1063 CTCCCGGTAACGAATCAAG-TTACGATTTCCGCAAGTATATTCAGAGATCATTAGAGAAA 1121
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1115 CTCCCGGTAACGAATCAAGATT-CGATTTCCGCAAGTATATTCAGAGATCATTAGAGAAA 1173
Query 1122 GACTTCAAAACCGTTGTTGAAATCAGTCCGGTTATCTGGTTTGTCGCTGTGCTATTCCTC 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GACTTCAAAACCGTTGTTGAAATCAGTCCGGTTATCTGGTTTGTCGCTGTGCTATTCCTC 1233
Query 1182 TTGGCCAATTCACATGGATTACGTTCTTACCTCTGGTTACCATTCATTCCACTAGTCGTA 1241
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TTGACCAATTCATATGGATTACGTTCTTACCTCTGGTTACCATTCATTCCACTAGTCGTA 1293
Query 1242 ATTCTAATAGTTGGAACAAAGCTTGAAGTCATAATAACAAAATTGGGTCTAAGAATCCAA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 ATTCTAATAGTTGGAACAAAGCTTGAAGTCATAATAACAAAATTGGGTCTAAGAATCCAA 1353
Query 1302 GACAAAGGTGATGTTGTGAGAGGCGCCCCGGTGGTTCAGCCTGGTGATGACCTCTTCTGG 1361
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1354 GAGAAAGGTGATGTGGTGAGAGGCGCCCCAGTGGTTCAGCCTGGTGATGACCTCTTCTGG 1413
Query 1362 TTTGGCCATCCACGGTTCATTCTTTTCCTTATCCACTTGGTCCTTTTTACGAATGCATTT 1421
|||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1414 TTTGGCAAGCCACGCTTCATTCTTTTCCTTATTCACTTGGTCCTTTTTACGAATGCATTT 1473
Query 1422 CAACTTGCCTTCTTTGCCTGGAGCACGTATCAATTCAATCTCAATAATTGTTTCCATGAA 1481
|||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1474 CAACTTGCATTCTTTGCCTGGAGTACGTATGAATTCAATCTCAATAATTGTTTCCATGAA 1533
Query 1482 AGCACTGCAGATGTGGTCATTAGACTTGTAGTTGGAGCTGTTGTACAGATACTTTGCAGC 1541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1534 AGCACTGCAGATGTGGTCATTAGACTTGTAGTTGGAGCTGTTGTGCAGATACTTTGCAGC 1593
Query 1542 TATGTGACTCTTCCACTCTATGCTCTTGTTACTCAGATGGGTTCTAAAATGAAGCCAACA 1601
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1594 TATGTGACTCTTCCACTCTATGCACTTGTTACTCAGATGGGTAGTAAAATGAAGCCAACA 1653
Query 1602 GTATTCAACGATAGAGTAGCCACGGCATTAAAGAAGTGGCATCGCACTGCAAAGAGCGAG 1661
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1654 GTATTCAACGATAGAGTAGCCACGGCATTAAAGAAGTGGCATCACACTGCAAAGAACGAG 1713
Query 1662 ACTAAACACGGAAGACACTCGGAATCCAACACACCTTTCTCTAGCCGTCCAGCCACACCA 1721
|| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1714 ACGAAACACGGAAGACACTCGGGATCCAACACACCTTTCTCTAGCCGTCCAACCACACCA 1773
Query 1722 ACACATGGCTCATCTCCAATCCATCTCCTTCACAATTTCAATAACCGGAGCGTTGAAAGT 1781
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1774 ACACATGGCTCATCTCCAATCCATCTCCTTCACAATTTCAATAACCGGAGCGTTGAAAAT 1833
Query 1782 TACCCAAATTCTCCTTCTCCTAGACACTCTGGTCATGGTCATCATGAACACCACTTTTGG 1841
||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1834 TACCCAAGTTCTCCTTCTCCTAGATACTCTGGTCATGGTCATCATGAACACCAATTTTGG 1893
Query 1842 GATCCTGAGTCCCAACACCAAGAAGCTGAAACTTCCACACATCATTCTCTTGCGCATGAA 1901
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 GATCCTGAGTCTCAACACCAAGAAGCTGAAACTTCCACACATCATTCTCTTGCGCATGAA 1953
Query 1902 AGCTCAGAAAAGAAGCTTGTTCTTGCATCTGTGGAACTTCCTCCTATAAGGACTAGCAAA 1961
||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 AGCTCAGAAC-----CT-GTTCTTGCATCTGTGGAACTTCCTCCTATAAGGACTAGCAAA 2007
Query 1962 AGCTTAAGAGATTTTTCTTTTAAGAAATGATGATTCTTGATTT--TGTATTTGGTTTCGT 2019
||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||
Sbjct 2008 AGCTTAAGAGATTTTTCTTTTAAGAAATGATGATTCTTG-TTTGCTATATTTGATTTCGT 2066
Query 2020 ACAGTGG 2026
|||||||
Sbjct 2067 ACAGTGG 2073
Score = 161 bits (87), Expect = 2e-38
Identities = 106/114 (93%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 1 AAAGTCAAAACTTTGAAGCTTTCTCGAATAA-GCCTTCATTA--TTACAGTCTCTCGTTG 57
||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 17 AAAGTCAAAACGTTGAAGCTTTCTCGAATAACGCCTTCTTTAGTTTACAGTCTCTCGTTG 76
Query 58 CGGGTCTTATCTTCTTCTTCTTC--CC-TCTTTCGTCTGCTCTATATTATGACC 108
||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 77 CGGGTCTTATCTTCTTCTTCTTCTTCCCTCTTTCGTCTGCTCTATATTATGACC 130
Score = 87.9 bits (47), Expect = 4e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2041 GATAGATGATATATTATACTCTGGCAATGCTTAAGAGTTTCACGAATTACACATAC 2096
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2142 GATACATGATATGTTATTCTCTGGCAATGCTTAAGAGTTTCACGAATTACACATAC 2197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103915128150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5