BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471268
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11320.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2185 0.0
> AT1G11320.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: C globular stage, F mature
embryo stage, petal differentiation and expansion stage, E expanded
cotyledon stage, D bilateral stage; Has 46 Blast hits
to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa
- 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:3807128-3808875 FORWARD
LENGTH=1535
Length=1535
Score = 2185 bits (1183), Expect = 0.0
Identities = 1364/1450 (94%), Gaps = 17/1450 (1%)
Strand=Plus/Plus
Query 1 TTTTCTCATCTTCTCTACGGATTC-AATCCTCTTATCATCGATAGAAATGATCGTCACTG 59
||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 4 TTTTCGCATCTTCTCT----ATTCAAATCCTCTTATCATCGATAGAAATGATCATCACTG 59
Query 60 GGTACGAAATTTTCTAGAATCTTCAAGCTTTCGTTACCAGTTTCCGA-TAAAAAATGGAC 118
||| |||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct 60 GGTTCGAAATTTTCTAGAATCTTCAAGCTTTCCTTACCAGTTTCTGATTAAAAGATGGAC 119
Query 119 CCAATTGCTTCGGTGTTGGAGAAAGTGAAGAGCTTTACGAAATCGAGCCAGGATTTAGTC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCAATTGCTTCGGTGTTGGAGAAAGTGAAGAGCTTTACGAAATCGAGCCAGGATTTAGTC 179
Query 179 TCCCGCCGTTTCGGCTTCCATGAGAATCCTTCTCGCCAGAATCCGATTGATATCTTAAAG 238
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 180 TCCCGCCATTTCGGCTTCCATGAGAATCCTTCTCGCCTGAATCCGATTGATATCTTGAAG 239
Query 239 AGATTACAAAGAGAAGCATTCTCGGATTTGATGAAACTTAGAGATAGACAAGAGAAAGTT 298
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CGATTACAAAGAGAAACATTCTCGGATTTGATGAAACTTAGAGAAAGACAAGAGAAAGTA 299
Query 299 GAGCGGATTATTTCCTCGCAGAAATCATCAAAATCAGGTCCGTTTCAAGAGACTAGCACT 358
|||||||| |||||||||||||||| ||| ||| |||||| ||||||||||||||||||
Sbjct 300 GAGCGGATCATTTCCTCGCAGAAATTATCGAAAGGAGGTCCCTTTCAAGAGACTAGCACT 359
Query 359 CATGTGAGAGGTGAGGTTGATGTGCTTGGAGCTATATTGCTGATGGGAAACACTGACGAG 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATGTGAGAGGTGAAGTTGATGTGCTTGGAGCTATATTGCTGATGGGAAACACTGACGAG 419
Query 419 GAGAGTTTCAATGGACTCCATAAAGAAGGAGTGAGACCTGGATTGCTTTCAAGGTTTGTG 478
|| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GAAAGTTTCAATGGACTCAACAAAGAAGGAGTGAGACCGGGATTGCTTTCAAGGTTTGTG 479
Query 479 TTTGAAACGAGTCTTAGGGAGACAGATAGGCTTGTGGCTGAGCTTGTTGCTGGATACAGA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TTTGAAACGAGTCTTAGGGAGACAGATAGGCTTGTGGCTGAGCTTGTTGCTGGATACA-A 538
Query 539 -GGGGAAGGAAATCACTGTGATTTTTCTGGGA-GAGAGTTGTCTTTAGCCAAAGTCTTCT 596
|||| ||||| |||| | ||||||| | ||| |||||||||||||||||||||||||||
Sbjct 539 TGGGGCAGGAAGTCACAGGGATTTTT-TAGGAGGAGAGTTGTCTTTAGCCAAAGTCTTCT 597
Query 597 ACAAGGCAGATATTAATGATTGGTTCTCTGCTGTTGCTGTTCCTGTTGGTGCGCATTTCA 656
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 598 ACAAGGCAGATATTAATGATTGGTTCTCTGCTATTGCTATTCCTGTTGGCGCGCATTTCA 657
Query 657 GAGACGTTGAGGCTTCTACTGTGTCTTCTTACCAGGGAATGAGTCTTACAGAAGTTTCTG 716
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 658 GAGACATTGAGGCTTCTACTGTGTCTTCTTACCAGGGAATGAGTCTCACAGAAGTTTCTG 717
Query 717 AACTTGGACCACCTCTTTTAAACCAACATAATGGTAGCGCCATAGGGTTAACAGTCAGAA 776
||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 718 AACTTGGACCACCTCTTTTAAGCCAACATAATGGGAGCGCCATAGGGTTAACATTCAGAA 777
Query 777 AGTCAAACATCACAGCTTCACTGGCCCAATCCATGTCAAACGTTGAAGTTGAACA-GG-- 833
||||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 778 AGTCAAATATCACAGCTTCACTGGCTCAGTCTATGTCAAACGTTGAAGTTGAACAGGGTT 837
Query 834 -G--TGCACCGAATCGTTGTTTCAGAACATTTGGGCAAGTAACCTGCCACATTCTCAGAA 890
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGACTGCACCGAATCGTTGTTTCAGAACATTTGGGCAAGTAACCTGCCACATTCTCAGAA 897
Query 891 GTTTAAAGCTATCTCTATTGGGATGTCACCAAGTTTTAACACCATCTAGCAACCTCCATT 950
|||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 898 GTTTAAAGCTATCTCTATTGGGCTGTCACCAAGTTTTAACATCATCTAGCAATCTCCATT 957
Query 951 CTGTTGGAGCCATTACACTTCCAGTAAGTTTTCTAAGGCGCCATACTGCTACGGAGCCTG 1010
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 958 CTGTTGGAGCCATTACAGTTCCAGTAAGTTTCCTAAGGCGCCATACTGCTACGGAGCCTG 1017
Query 1011 AAACACCAGCACCGCCTCTGGAGATGAGTAGAAGCATGAATCATGTGTTGTCTAGTTCCA 1070
|| || ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 1018 AACCATCAGCACCGCCTCTGGAGATGAGTAGAAACATGAATCATGTGTCGTCCAGTTCCA 1077
Query 1071 TTGCTTTGAAGTTAGACTCTCTAATGGACGAGTCTACAAAACTTGGGGGATGGATTGAAA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTGCTTTGAAGTTAGACTCTCTAATGGACGAGTCTACAAAACTTGGGGGATGGATTGAAA 1137
Query 1131 TTCAGAACTCAAGAGAAAAGCAAGTAAAATGGTCAGTGTCTATTACAGACAACCCAGAGG 1190
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1138 TTCAGAACTCAAGAGAAAAGCAAGTGAAATGGTCAGTGTCTATTACAGACAACCCAGAGG 1197
Query 1191 ATGAAGTGGGCTGGGGCATGAGCGTTGGGGGTGTTGTTGATGGTACAAGAAATCATGATC 1250
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1198 ATGAAGTGGGCTGGGGCATGAGCGTTGGGGGAGTTGTTGATGGTTCAAGAAATCATGATC 1257
Query 1251 AGTTTCAGGTGGAATCGTATCTGAAATTAAACATAGGTGATCGGTTTAGCTTAAGACCAG 1310
|||||||||||||||| ||||||||||| |||||||| ||| ||||||| ||||| |||
Sbjct 1258 AGTTTCAGGTGGAATCATATCTGAAATTCAACATAGGCGATAGGTTTAGATTAAGTCCAT 1317
Query 1311 GTCTTGTTTATCACATAAACAGTAACGGAAGAACCATAGGTCTTATGCTACAGTCTCACT 1370
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1318 GTCTTGTTTATCACACAAACAGTGACGGAAGAACCATAGGTCTTATGCTAAAGTCTCACT 1377
Query 1371 GGTCGCTGTGATCTCAAGGTTACTCAATACATGTACATTGATGGTTCTAAATACCACTGA 1430
|||||||||||||||||| ||||||| ||| |||||||||||||||| || |||||||||
Sbjct 1378 GGTCGCTGTGATCTCAAGTTTACTCATTACTTGTACATTGATGGTTCGAATTACCACTGA 1437
Query 1431 CTGCA-TTTT 1439
||||| ||||
Sbjct 1438 CTGCAGTTTT 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5