BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471271
Length=2649
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11350.1 | Symbols: CBRLK1, SD1-13, RKS2 | S-domain-1 13 | c... 4139 0.0
AT1G11300.1 | Symbols: | protein serine/threonine kinases;prot... 599 5e-170
> AT1G11350.1 | Symbols: CBRLK1, SD1-13, RKS2 | S-domain-1 13 |
chr1:3817591-3820805 REVERSE LENGTH=2680
Length=2680
Score = 4139 bits (2241), Expect = 0.0
Identities = 2492/2616 (95%), Gaps = 6/2616 (0%)
Strand=Plus/Plus
Query 1 GGATT-AATACAAGCCATATAGCTCTGCGTTTCTCTCAGACTTCCTGAGAAGATGGGTTG 59
||||| ||| ||| || || |||||| ||||||||||| | || ||||||||||||||||
Sbjct 3 GGATTAAAT-CAACCCTTAAAGCTCTACGTTTCTCTCAAAGTTGCTGAGAAGATGGGTTG 61
Query 60 TTTGTTTATTCTTCTTCTTACTTTGACTTGCTTTTCCTTGAGGCTTTGTTTGGCAACTGA 119
|||| | |||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 62 TTTGCTAATTCTTCTTCTTACATTGATTTGCTTTTCCTTGAGGCTTTGTTTGGCTACTGA 121
Query 120 TACAATCACGTTTTCTAGCGAGTACAGGGACTCTGAGACTGTCGTCTCCAACCACAGCAC 179
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 122 TGTAATCACGTTTTCTAGCGAGTTCAGGGACTCTGAGACTGTCGTCTCCAACCACAGCAC 181
Query 180 CTTCAGGTTTGGTTTCTTCAGCCCGGTTAATTCCACTGGACGTTATGCAGGGATATGGTT 239
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 182 CTTCAGGTTTGGTTTCTTCAGCCCGGTTAACTCCACAGGACGTTATGCAGGGATATGGTT 241
Query 240 CAATAACATTCCTGTTCAAACCGTGGTTTGGGTAGCAAACAGGAACAGCCCGATCAATGA 299
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 242 CAATAATATTCCTGTTCAAACCGTGGTTTGGGTAGCAAACAGTAACAGCCCGATCAATGA 301
Query 300 CTCTTCCGGAATGGTTGCCATATCCAACGAAGGGAATCTTGTGGTTATGGATGGTCGTGG 359
|||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 302 CTCTTCCGGAATGGTTTCCATATCCAAGGAAGGGAATCTTGTTGTTATGGATGGTCGCGG 361
Query 360 ACAGGTTCACTGGTCCACCAATGTCTCGGTGCCGGTGGTTGCTAACACCACCTATGCCCG 419
|||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 362 ACAGGTTCACTGGTCCACCAATGTCTTGGTGCCGGTGGCTGCTAACACCTTCTATGCCCG 421
Query 420 GTTGCTGAATACAGGGAACCTTGTGCTGCTAGGAACTACTAACAGTGGGGATGAGATTCT 479
||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 422 GTTGCTGAATACAGGGAACCTCGTGCTGCTAGGAACTACTAATACTGGGGATGAGATTCT 481
Query 480 TTGGGAGAGCTTTGAGCATCCTCAAAACATTTATTTGCCAACAATGAGACTTGCTACTGA 539
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 482 TTGGGAGAGCTTTGAGCATCCTCAAAACATATATTTGCCAACAATGAGTCTTGCTACTGA 541
Query 540 CGCGAAAACAGGGAGGAGCCTTAAGCTAAGATCTTGGAAAAGCCCGTCTGATCCATCGCC 599
| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 542 CACGAAAACAGGCAGGAGCCTTAAGCTAAGATCTTGGAAAAGCCCGTTTGATCCATCGCC 601
Query 600 TGGACGATACTCTGCAGGTTTGATTCCTCTGCCATTTCCAGAACTTGTCGTCTGGAAAGA 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 602 TGGACGATACTCTGCAGGTTTGATTCCTCTGCCATTTCCAGAACTTGTTGTCTGGAAAGA 661
Query 660 TGATCTTCTGATGTGGCGTAGCGGTCCGTGGAATGGTCAATACTTCATTGGGTTACCAAA 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 662 TGATCTTCTGATGTGGCGTAGCGGTCCATGGAATGGTCAATACTTCATTGGGTTACCAAA 721
Query 720 TATGGATTACCGTATCAATCTTTTCGAGTTAACCCTTAGTAGTGACAATCGAGGATCTGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TATGGATTACCGTATCAATCTTTTCGAGTTAACCCTTAGTAGTGACAATCGAGGATCTGT 781
Query 780 CTCCATGTCCTATGCTGGAAATACATTGCTGTATCATTTTCTCTTGGACTCCGAAGGAAA 839
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 782 CTCCATGTCCTATGCTGGAAATACTTTGTTGTATCATTTTCTCTTGGACTCCGAAGGAAG 841
Query 840 CGTGTTTCAGAGAGATTGGAACTTGGCTATGCAAGAATGGAAGACCTGGTTAAAGGTCCC 899
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 842 CGTGTTTCAGAGAGATTGGAACGTGGCTATCCAAGAATGGAAGACCTGGTTAAAGGTCCC 901
Query 900 ATCGACAAAGTGTGATACATATGCCACATGTGGCCAATTCGCTAGTTGCAAATTCAATTA 959
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 902 ATCGACCAAGTGTGATACATACGCCACATGTGGCCAATTCGCTAGTTGCAGATTCAATCC 961
Query 960 CGGGTCAACTCCGCCTTGCATGTGCATTAGAGGGTTCAAGCCACAGAGTTACGCGGAGTG 1019
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 962 CGGGTCGACTCCGCCTTGCATGTGCATTAGAGGGTTTAAGCCACAGAGTTACGCGGAGTG 1021
Query 1020 GAAGAACGGAAACTGGACTCAGGGATGCGTAAGAAAGGTGCCATTGCAGTGCGAAAGACG 1079
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1022 GAACAACGGAAACTGGACTCAGGGATGCGTAAGAAAGGCACCATTGCAGTGCGAAAGTCG 1081
Query 1080 AGACAACAACGATAGAAGTAGAAAAAGTGATCGATTTGTGAGAGTGCAAAAGATGAAAGT 1139
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1082 AGACAACAACGATGGAAGTAGAAAAAGTGATGGATTTGTGAGAGTGCAAAAGATGAAAGT 1141
Query 1140 GCCCCACAATCCACAACGATCTGGAGCAAATGAACAAGACTGTCCTGGGAACTGTCTGAA 1199
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1142 GCCCCACAATCCACAACGATCTGGAGCCAATGAACAAGACTGTCCTGAGAGCTGTCTGAA 1201
Query 1200 GAACTGTTCTTGTACGGCTTACTCATTCGACAGAGGGATTGGGTGTCTTCTTTGGAGCGG 1259
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1202 GAACTGTTCTTGTACGGCTTACTCATTCGACAGAGGGATTGGTTGTCTTCTTTGGAGCGG 1261
Query 1260 AAACTTGATGGATATGCAAGAGTTTTCGGGCACTGGTGTGGTTTTTTACATTCGTCTCGC 1319
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1262 AAACTTGATGGATATGCAGGAGTTTTCTGGCACTGGCGTGGTTTTTTACATTCGTCTTGC 1321
Query 1320 AGATTCAGAATTCAAAACGCCGACCAATCGATTAATTGTGATCACAGTAACTTTGCTAGT 1379
||||||||| || |||| || ||||||||| | |||||||||||||||||||||||||||
Sbjct 1322 AGATTCAGAGTTTAAAAAGCGGACCAATCGGTCAATTGTGATCACAGTAACTTTGCTAGT 1381
Query 1380 AGGTGCTTTTTTGTTTGCAGTGACTGTTGTCTTAGCACTGTGGAAGATCGTTAAGCATAG 1439
||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1382 AGGCGCTTTTTTGTTTGCAGGGACTGTTGTCTTAGCACTGTGGAAGATCGCTAAGCATAG 1441
Query 1440 AGAGAAGAACAGAAACACAAGGCTACTGAATGAGAGAATGGAAGCTTTATGTAGTAGTGA 1499
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 1442 AGAGAAGAACAGAAACACAAGGCTACTTAATGAGAGAATGGAAGCTTTAAGTAGTAATGA 1501
Query 1500 CGTTGGTGCAATCCTTGTGAATCAATACAAGCTTAAAGAGCTACCACTGTTCAAGTTCCA 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1502 CGTTGGTGCAATCCTTGTGAATCAATACAAGCTTAAAGAGCTACCACTGTTCGAGTTCCA 1561
Query 1560 AGTGTTAGCAGTGGCGACTGACAATTTTTCAATCACAAACAAACTCGGACAAGGAGGATT 1619
|||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 1562 AGTGTTAGCAGTGGCGACCAACAATTTTTCTATCACAAACAAGCTCGGACAAGGAGGATT 1621
Query 1620 TGGTGCTGTTTACAAGGGGAGGTTACAAGAAGGGCAAGAGATCGCTGTGAAGAGGCTTTC 1679
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1622 TGGTGCTGTTTACAAGGGGAGGTTACAAGAAGGGCTCGATATCGCTGTGAAGAGGCTTTC 1681
Query 1680 GCGAACATCGGGACAAGGAGTCGAGGAGTTTGTGAATGAAGTGGTCGTGATCTCTAAGTT 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1682 GCGAACATCGGGACAAGGAGTCGAGGAGTTTGTGAATGAAGTGGTCGTGATCTCAAAGCT 1741
Query 1740 GCAACACCGGAATCTCGTGAGATTGCTTGGTTTCTGCATTGAAGGAGAAGAGAGGATGTT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 GCAACACCGGAATCTCGTGAGATTGCTTGGTTTCTGCATTGAAGGAGAAGAGAGGATGTT 1801
Query 1800 GGTCTATGAGTTCATGCCAGAGAATTGTTTAGACGCATTTCTATTTGACCCGGTGAAGCA 1859
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1802 GGTCTATGAGTTCATGCCAGAGAATTGTTTAGACGCATATCTATTTGACCCGGTGAAGCA 1861
Query 1860 AAGACTTCTTGACTGGAAGACGCGGTTTACCATAATCGATGGGATTTGCAGAGGTCTTAT 1919
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1862 AAGACTTCTTGACTGGAAGACGCGGTTTAACATAATCGATGGGATTTGCAGAGGTCTTAT 1921
Query 1920 GTACCTTCACAGAGATTCAAGGCTGAAGATCATACACAGAGATTTAAAAGCAAGCAATAT 1979
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1922 GTACCTTCACAGAGATTCAAGGCTGAAGATCATACACAGAGATCTAAAAGCAAGCAATAT 1981
Query 1980 CTTGTTAGATGAGAATCTAAACCCGAAGATATCCGATTTTGGGCTGGCTAGGATTTTCCA 2039
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1982 TTTGTTAGATGAGAATCTAAACCCGAAGATATCCGACTTTGGGCTGGCTAGGATTTTCCA 2041
Query 2040 GGGGAATGAGGATGAAGCAAACACCCTAAGAGTGGTTGGAACATACGGTTATATGGCACC 2099
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 2042 GGGGAATGAGGATGAAGTAAGCACCGTAAGAGTGGTTGGAACATACGGTTATATGGCACC 2101
Query 2100 TGAATACGCAATGGGAGGGTTGTTCTCAGAGAAATCTGATGTTTTCAGCTTAGGAGTCAT 2159
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2102 CGAATATGCAATGGGAGGGTTGTTCTCAGAGAAATCTGACGTTTTCAGCTTAGGAGTCAT 2161
Query 2160 ACTTTTAGAGATTGTGAGTGGAAGAAGAAACTCAAGCTTTTACAATGATGAGCAGAATCC 2219
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2162 ACTCTTAGAGATTGTGAGTGGAAGAAGAAACTCAAGCTTTTACAATGATGGGCAGAATCC 2221
Query 2220 AAATCTTTCAGCTTATGCATGGAAACTCTGGAACGAC-GGGGAAGATATTGCTCTCGTGG 2278
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 2222 AAATCTTTCAGCTTATGCATGGAAACTCTGGAAC-ACCGGGGAAGATATTGCTCTTGTGG 2280
Query 2279 ATCCGGTCATCTTTGAAGAGTGTTTTGAAAATGAAATACGCAGATGTGTGCACATAGGAC 2338
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2281 ATCCGGTCATCTTTGAAGAGTGTTTTGAAAATGAAATACGCAGATGTGTGCACGTAGGAC 2340
Query 2339 TCTTGTGTGTACAAGATCACGCAAATGATAGACCGAGCGTTGCAACGGTGATTTGGATGC 2398
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2341 TATTGTGTGTACAAGATCACGCAAATGATAGGCCGAGCGTTGCAACGGTGATTTGGATGC 2400
Query 2399 TAAGTAGCGAGAACTCCAACCTTCCAGAGCCAAAGCAACCCGCATTTATACCTAGAAGGG 2458
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2401 TAAGTAGCGAGAACTCAAACCTTCCAGAGCCAAAGCAACCTGCATTTATACCTAGAAGGG 2460
Query 2459 GCACTTCAGAAGTTGCATCCTCAGGG-CAAAGCGACCCAAGTGCGTCAATGAACAATGTG 2517
||||||||||||||| |||||| ||| |||||||||||||| || || || |||||||||
Sbjct 2461 GCACTTCAGAAGTTGAATCCTC-GGGACAAAGCGACCCAAGAGCATCGATCAACAATGTG 2519
Query 2518 AGCCTCACAAAAATAACAGGACGTTAGCTCTGTAAGTGAGATAAACCTACTACTAAAGAA 2577
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2520 AGCCTCACAAAAATAACAGGACGTTAGCTCTGTAAGTGAGATAAACCTACTGCTAAAGAA 2579
Query 2578 TTTTTATGACAGATTGATTAAATTGTACATCTATAT 2613
|||| |||| | | || |||| ||||| |||| |||
Sbjct 2580 TTTTGATGAAAAAATGTTTAAGTTGTATATCTGTAT 2615
> AT1G11300.1 | Symbols: | protein serine/threonine kinases;protein
kinases;ATP binding;sugar binding;kinases;carbohydrate
binding | chr1:3794238-3800719 FORWARD LENGTH=5104
Length=5104
Score = 599 bits (324), Expect = 5e-170
Identities = 558/670 (83%), Gaps = 20/670 (3%)
Strand=Plus/Plus
Query 1534 AAAGAGCTACCACTGTTCAAGTTCCAAGTGTTAGC-AGTGGCGACTGACAATTTTTCAAT 1592
||||||||||| |||| |||| ||||||||||| | | || || || || || || |
Sbjct 4115 AAAGAGCTACCTTTGTTTGAGTTTCAAGTGTTAGCTACT-GCAACCGATAACTTCTCTCT 4173
Query 1593 CA-CAAACAAACTCGGACAAGGAGGATTTGGTGCTGTTTACAAGGGGAGGTTACAAGAAG 1651
| | || || ||||||||||| || |||||| | ||||||||||||| ||| | |||||
Sbjct 4174 TAGC-AATAAGCTCGGACAAGGCGGTTTTGGTCCGGTTTACAAGGGGATGTTGCTAGAAG 4232
Query 1652 GGCAAGAGATCGCTGTGAAGAGGCTTTCGCGAA-CATCGGGACAAGGAG-TCGAGGAGTT 1709
| |||||||| ||||||||||| || || | || |||| |||||||| | | ||||| |
Sbjct 4233 GTCAAGAGATTGCTGTGAAGAGACTGTCAC-AAGCATCAGGACAAGG-GCTTGAGGAACT 4290
Query 1710 TGTGAATGAAGTGGTCGTGATCTCTAAGTTGCAACACCGGAATCTCGTGAGATTGCTTGG 1769
||| | ||||||||| ||||| |||||||||||||| || ||||| |||| ||| ||||
Sbjct 4291 TGTCACTGAAGTGGTTGTGATTTCTAAGTTGCAACATCGAAATCTGGTGAAATTATTTGG 4350
Query 1770 TTTCTGCATTGAAGGAGAAGAGAGGATGTTGGTCTATGAGTTCATG-CCAGAGAATTGTT 1828
|| |||||||| ||| ||||| |||||||| ||||||||||||||| ||| |||| | |
Sbjct 4351 TTGCTGCATTGCAGGGGAAGAAAGGATGTTAGTCTATGAGTTCATGCCCA-AGAAAAGCT 4409
Query 1829 TAGACGCATT-TCTATTTGA-CC-CGGTGAAGCAAAGACTTCTTGACTGGAAGACGCGGT 1885
||||| || | ||||||| || || |||||||| ||||||||||||||| |||||||
Sbjct 4410 TAGAC-TTTTATATATTTGATCCAAGG-GAAGCAAA-ACTTCTTGACTGGAACACGCGGT 4466
Query 1886 TT-ACCATAATCGATGGGATTTGCAGAGGTCTTATGTACCTTCACAGAGATTCAAGGCTG 1944
|| | |||||| |||| || || |||||||| ||||||||||||||||||| ||||||
Sbjct 4467 TTGA-AATAATCAATGGAATATGTAGAGGTCTCCTGTACCTTCACAGAGATTCTAGGCTG 4525
Query 1945 AAG-ATCATACACAGAGATTTAAAAGCAAGCAATATCTTGTTAGATGAGAATCTAAACCC 2003
|| ||||| ||||||||| | ||||||||||| |||||| ||||||||||||| | ||
Sbjct 4526 -AGAATCATTCACAGAGATCTGAAAGCAAGCAACATCTTGCTAGATGAGAATCTGATTCC 4584
Query 2004 GAAGATATCCGATTTTGGGCTGGCTAGGATTTTCCAGGGGAATGAGGATGAAGCAAACAC 2063
||| ||||| ||||||||| |||| ||||| |||| ||||||||| ||||||||||||||
Sbjct 4585 GAAAATATCTGATTTTGGGTTGGCCAGGATATTCCCGGGGAATGAAGATGAAGCAAACAC 4644
Query 2064 CCTAAGAGTGGTTGGAACATACGGTTATATGGCACCTGAATACGCAATGGGAGGGTTGTT 2123
| ||| || ||||||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct 4645 CAGAAGGGTCGTTGGAACATATGGCTATATGGCACCTGAATATGCAATGGGAGGACTGTT 4704
Query 2124 CTCAGAGAAATCTGATGTTTTCAGCTTAGGAGTCATACTTTTAGAGATTGTGAGTGGAAG 2183
|||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||
Sbjct 4705 TTCAGAGAAATCTGATGTTTTCAGCTTAGGAGTGATACTCTTAGAGATTATCAGTGGAAG 4764
Query 2184 AAGAAACTCA 2193
||||||||||
Sbjct 4765 AAGAAACTCA 4774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131537724546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5