BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471274
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11380.1 | Symbols: | PLAC8 family protein | chr1:3832623-3... 1506 0.0
> AT1G11380.1 | Symbols: | PLAC8 family protein | chr1:3832623-3834191
FORWARD LENGTH=1107
Length=1107
Score = 1506 bits (815), Expect = 0.0
Identities = 976/1051 (93%), Gaps = 21/1051 (2%)
Strand=Plus/Plus
Query 1 ACCAAAAAAGGTACAAA-TCCTTTGGGAGAAG--AT-ATCAAAGAGAAAACCCCTAAATA 56
||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| ||
Sbjct 1 ACCAAAAAAGGTACAAAGTCCTTTGGGAGAAGATATCATCAAAGAGAAAAGCCCTAATTA 60
Query 57 AATCTCTCTTTTTTCATCAATGGCGGATTTGGATAAACTCGAGAGTggaggaggaggagg 116
|| |||| ||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 61 AA--TCTC-----TCATCAATGGCGGATTTGGATAAACTC--GAG-GGTGGAGGAGGAGG 110
Query 117 aggagCCGTTGAAATCGGTGACATTAGAGCCGACGACGGCGGCGGAGCGGTGGAAGAGAG 176
||||||||| | ||||| |||||||||||||| || ||||| ||||||||||| |||||
Sbjct 111 AGGAGCCGTCGTAATCGCCGACATTAGAGCCGATGAAGGCGGAGGAGCGGTGGAGGAGAG 170
Query 177 GGAGAGGTTAACGGAACTTGAAGGGATTTCTGTGCTGGATTTCGATTTGCTTTGCTCGAC 236
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 171 GGAGAGGTTAACGGAACTTGAAGGAATTTCTGTGTTGGATTTCGATTTGCTTTGCTCAAC 230
Query 237 GGTTGCGCTTCAGACTCAGGGGAAATGGAGGAAACTTGAAAGCTCGGAAGGAGAAGATGC 296
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 231 GGTTGCGCTTCAGACTCAGGGGAAATGGAGGAAGCTTGAGAGCTCGGAGGGAGAAGATGC 290
Query 297 GACGGAGGATGATTATGGCGGCGGCGTTTTACGGCTCTGGGAAGGCGATGTTATGGATTG 356
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 291 GACGGAGGATGATTATGGCGGTGGCGTTTTACGGCTTTGGGAAGGCGATGTTATGGATTG 350
Query 357 CTTTGAAGATCGTCATCTCTGTATCGAATCTGCTTGCTGTCCATGCTACAGATTCGGGAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CTTTGAAGATCGTCATCTCTGTATCGAATCTGCTTGCTGTCCATGCTACAGATTCGGGAA 410
Query 417 AAACATGACAAGGACTGGTTTTGGTTCTTGCTTGCTTCAGGGTGCTGTTCATATGATTCT 476
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 AAACATGACAAGGACTGGTTTTGGTTCTTGCTTTCTTCAGGGTGCTGTTCATATGATTCT 470
Query 477 TATTGCCGGTTTCTTATTCAACGTTGCTGCGTTTGCTGTAACTAAGAGGCACTGCTTTCT 536
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 471 TATTGCCGGTTTCTTATTCAATGTTGTTGCTTTTGCTGTAACTAAGAGGCACTGCTTTCT 530
Query 537 CTATCTGGCTATTGCTTTCGTTCTTTTGATTGGATCCTACTTGGGTTTCTTCCGTATGCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTATCTGGCTATTGCTTTCGTTCTTTTGATTGGATCCTACTTGGGTTTCTTCCGTATGTT 590
Query 597 GATAAGAAGGAAGTTTAACATTAGAGGTACTGATAGTTTCTTGGACGATTGCATCCACCA 656
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 591 GATAAGAAGGAAGTTTAATATTAGAGGTACTGATAGTTTCTTGGACGATTTTATCCACCA 650
Query 657 TCTCGTCTGTCCATTCTGTACATTAACTCAGGAATCGAAAACTCTGGAGATGAACAATGT 716
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 651 TCTCGTATGTCCATTCTGTACATTAACTCAGGAATCTAAAACTCTGGAGATGAACAATGT 710
Query 717 TCATGACGGTATCTGGCATGGTCGAGGAGACACTCTATGCATAGGCGGCTATCCCGAAGG 776
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 711 TCATGATGGTATCTGGCATGGTCGAGGAGACACTCTATGTATAGGCGGCTATTCCGAAGG 770
Query 777 AAAAGCTTTTCTCAAGTTGCATTCGCCTCCAGTTATTGTATCAACAATGTCATCATCTCA 836
||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 771 AAAAGCTTTTCTCGAGCTGCATTCGCCTCCAGTTATTGCCTCAACAATGTCATCATCTCA 830
Query 837 ACCCTAACAACACACAACAGAGTTTCTTT-ATAGAAACCGCAGCCTAGGTCTGCG-CTTC 894
|||||||||||||||||||||||| | || | |||||||||| || || |||| | | ||
Sbjct 831 ACCCTAACAACACACAACAGAGTT-CATTCACAGAAACCGCAACCAAGTTCTGTGGCCTC 889
Query 895 CATAGCAAATTTGCATTGATCTCAACATCGGCTTATGGCGATTGATTTGCTCAACGGTGT 954
|||||||| | ||||||| | |||||||||||||||||| ||||||||||||||| ||||
Sbjct 890 CATAGCAA-TCTGCATTGGTGTCAACATCGGCTTATGGCAATTGATTTGCTCAACAGTGT 948
Query 955 AAACAGATTCATGTCAAAAGAAAACTTTCATGTTT-GTTTTCAAAACTGTGGTATATAGC 1013
|||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 949 AAACTGATTCATGTCAAGAGAAAACTTTCATGTTTAGTTTTGGAAACTGTGGTATATAGC 1008
Query 1014 AAACATGGAAGTTTGAT-GAAAAAGTCCTGT 1043
||||||||||||||||| |||| |||||||
Sbjct 1009 AAACATGGAAGTTTGATAGAAAT-GTCCTGT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5