BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471276
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11400.1 | Symbols: PYM | partner of Y14-MAGO | chr1:3837850... 1419 0.0
> AT1G11400.1 | Symbols: PYM | partner of Y14-MAGO | chr1:3837850-3840207
FORWARD LENGTH=1044
Length=1044
Score = 1419 bits (768), Expect = 0.0
Identities = 910/977 (93%), Gaps = 16/977 (2%)
Strand=Plus/Plus
Query 44 GGTTTCGTTTCACCGGATTTGGGCTCTCCGGCGACGGAGAATAGCCA-AAT-T-TGATAC 100
||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 80 GGTTTCGTTTCACCGGATTTGGGCTCTCCGGCGACGGAGAATAGCCACCATCTCCG-T-- 136
Query 101 AGAAAACAGTAGACATAGCTGAGAAACAAGAGAAGTGACAAGGGTGATTGAAAACTTGAA 160
|| | || | | ||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 137 AGTATAC--TTG--ATAGCTGAGGAACAAGAGAAGTGACAAGGGTGATTGAAAAGTTGAA 192
Query 161 GGACTCTGATGGGAAGCAGCAACAAAAGTGGAGAACAAGGAAAGCAAATGGCAGAACTGA 220
|||||| |||||||||||| ||| |||||||||||||||| |||||| |||||||
Sbjct 193 GGACTCAGATGGGAAGCAG------AAGCGGAGAACAAGGAAAGCGAATGGCGGAACTGA 246
Query 221 GCAAAAGTCTTAAAGAAGGTGAGAGGATTCTGGAGCCCACACGTAGACCTGATGGTACCC 280
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 247 GCAAAAATCTTAAAGAAGGTGAGAGGATTCTGGAGCCCACACGTAGACCTGATGGTACTC 306
Query 281 TCCGGAAACCCATCCGGATTCGAGCTGGATATGTTCCACAAGATGAAGTTGTCAAATATC 340
||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 307 TCCGGAAACCCATTCGGATTCGACCTGGATATACTCCAGAAGATGAAGTTGTCAAATATC 366
Query 341 AGTCCAAAGGTTCTCTGATGAAGAAGGAGATGGCCTCACAAGGGCCTCCTGGTTATGAAC 400
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 367 AGTCCAAAGGTTCTCTGATGAAGAAGGAGATGGCCTCACAAGGGCCTCCAGGTTATGAAC 426
Query 401 CTGATCCAGCTCCGAAACCAAAGACTAAATCTGCTAAGAGGAACGAACGTAAAAAAGAGA 460
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 427 CTGATCCAGCTCCTAAACCAAAGACTAAAGCTGCTAAGAGGAACGAACGTAAAAAAGAGA 486
Query 461 AGAGATTACAGTCTACTGCAGAAAAAGGTAACAGCTCTGAGGATGGATCAGCTAGTAATG 520
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 487 AGCGATTACAGGCTACTGCAGAAAAAGCTAACAGCTCTGAGGATGGATCAGCTAGTAATG 546
Query 521 GATCCCAATCGGTGAATGTATTGGCTTCTGAAATGGAGGCTTTGGACGTTTCTTCAAATA 580
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 547 GATCCCAATCGGTGAATGTATTGGCTTCTGAAATGGAGGCTTTGGACGTTTCGTCAAATA 606
Query 581 ATGATGTATGTGGAGAAGCGCCCAATCCAGTAACTACAGGAGAAGACGTAGAGAAAAGAA 640
||||||||||||| | ||| || ||||||| ||| |||||||||||||||||||||||||
Sbjct 607 ATGATGTATGTGGGGGAGCACCTAATCCAGGAACCACAGGAGAAGACGTAGAGAAAAGAA 666
Query 641 TCCGCGCACTTAAGAAGAAAATCCGACTTACAGAAGCTCAACAGCAGAAGACTGCTTCCC 700
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 667 TCCGCGCACTTAAGAAGAAAATCCGACTCACAGAAGCTCAACAGCAGAAGACTGCTTCCC 726
Query 701 AAGACTTAAACCCGGAGCAGTTAGAGAAATTTTCTAAGTTGGAAGAATGGAGACAAGAAC 760
|||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 727 GAGACCTAAACCCAGAGCAGTTAGAGAAATTCTCTAAGTTGGAAGAATGGAGGCAAGAAC 786
Query 761 TCAAGGCTCTAGAGGATAAGGAGGCTTGACTTGCTGCAGCATCGACATGAATGGTCTAAC 820
|||||||||| |||||||||| ||||| ||||||||||||||| |||||||| |||||||
Sbjct 787 TCAAGGCTCTGGAGGATAAGGCGGCTTAACTTGCTGCAGCATCAACATGAATTGTCTAAC 846
Query 821 TTTTAGACAGGCTGTAGTATCTCTCATGAAATTTCTGGAACCAATCCAAATTTGTATCAA 880
|||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TTTTAGGCAGGCTGCAGTTTCTCTCATGAAATTTCTGGAACCAATCCAAATTTGTATCAA 906
Query 881 TGAAAAGAAAGCTGTTGTTACTTCTTAGGTTTTGTCAGATCTGATTAATGAACTTGGCGC 940
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 907 TGAAAAGAAGGCTGTTGTTACTTGTTAGGTTTTGTCAGATCTGATTAATGAACTTGGCGC 966
Query 941 AATGCCTGAATCCTCATGGGAATTGATGTCACATTGTGTTTGCGTTTGGTCCTAATCTAA 1000
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 967 AATGCCTGAATCTTCATGGGAATTGATTTCACATTGTGTTTGCGTTTGGTCCTAATCTAA 1026
Query 1001 AGAACGTGATTCCAAAC 1017
|||| |||||||||||
Sbjct 1027 AGAATATGATTCCAAAC 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5