BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471280
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11430.1 | Symbols: | plastid developmental protein DAG, pu... 1343 0.0
> AT1G11430.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:3847243-3849162 FORWARD LENGTH=953
Length=953
Score = 1343 bits (727), Expect = 0.0
Identities = 869/935 (93%), Gaps = 20/935 (2%)
Strand=Plus/Plus
Query 1 ACTCTCTCTTCGATTTCTGCAGTTTCAATGGCTTCCTTAACAACATCTTCGTCTTCCTCG 60
||||||||||||||||| ||| || ||||||||||||| |||||| |||| |||||||||
Sbjct 4 ACTCTCTCTTCGATTTCAGCAATTGCAATGGCTTCCTTCACAACAACTTCTTCTTCCTCG 63
Query 61 CTTCTTCC-CAAAACACTTCTCCCCGTAAGCCACCTGAATCGTTTCTCTACACTCTCCGG 119
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 64 CTTC-TCCTCAAAACTCTTCTCCCCGTAAGCCACCTGAATCGTTTCTCTACACTCTCTGG 122
Query 120 TATCCGCGTTGGCGACACATGGACACCTCTGCTTCGGAGCATCTCCACCGCTGGGTCTCG 179
||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 123 TATCCGCGTTGGCGATTCATGGACTCCTCTGCTCCGGAACATCTCCACCGCTGGGTCTCG 182
Query 180 GCGTCGGGTGGCGATTGTGAAAGCTGCGACGGTGGATTCGGATTACTCGTCGAAACGGAG 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GCGTCGAGTGGCGATTGTGAAAGCTGCGACGGTGGATTCGGATTACTCGTCGAAACGGAG 242
Query 240 TAGTAGTAATGAGCAGAGAGAGACGATTATGCTTCCTGGATGTGATTACAATCATTGGCT 299
| ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 243 CAATAGCAATGAGCAGAGAGAGACGATTATGCTTCCTGGTTGCGATTACAATCATTGGCT 302
Query 300 TGTTGTAATGGAGTTTCCTAAAGATCCAGCTCCAACTAGAGACCAGATGATTGATACTTA 359
|||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||
Sbjct 303 CATTGTAATGGAGTTTCCTAAAGATCCAGCGCCAAGTAGGGATCAGATGATTGATACTTA 362
Query 360 CCTTAACACTCTAGCTACTGTTCTTGGAAGCATGGAAGAGGCAAAGAAGAACATGTATGC 419
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 363 CCTTAACACTCTTGCTACTGTTCTTGGCAGCATGGAAGAGGCGAAGAAGAACATGTATGC 422
Query 420 ATTCAGTACCACCACATATACTGGATTCCAATGCACCATCGACGAAGAAACATCTGAGAA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATTCAGTACCACGACATATACTGGATTCCAATGCACCATCGACGAAGAAACATCTGAGAA 482
Query 480 GTTCAAGGGTTTGCCTGGAGTTCTCTGGGTCTTGCCTGACTCCTACATAGATGTTAAGAA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 GTTCAAGGGTTTGCCTGGAGTTCTCTGGGTCTTGCCTGACTCCTACATAGATGTCAAGAA 542
Query 540 CAAAGACTATGGAGGCGACAAGTACATCAATGGAGAGATTATCCCGTGCACATACCCGAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 543 CAAAGACTATGGAGGCGACAAGTACATCAATGGAGAGATTATCCCGTGCACATACCCAAC 602
Query 600 ATACCAACCAAAGCAGCGCAATAACACAAAGTATCAAAGTAAGAGGTACGAAAGAAAAAG 659
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 603 ATACCAACCAAAGCAGCGCAATAACACTAAGTATCAAAGTAAGAGATACGAAAGAAAAAG 662
Query 660 AGACGGTCCTCCACCACCTGAACAGAGGAAACCAAGACAAGAACCAGCCGCTTCTGATTC 719
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 663 AGACGGTCCTCCACCTCCTGAACAGAGGAAACCAAGACAAGAACCAGCAGCCTCTGATTC 722
Query 720 CTCTTAAACGATGATAAGATAATGGAATGTTTGCAAGTTTTGATCTTTTGGTTAGTCCCT 779
||||||||| || ||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 723 CTCTTAAACTATAATAAGATAATGGAGTGTTTGCAAGTTTTGATCTTTTGGTTAG-CACT 781
Query 780 TAGCTTATTGAAGTCGGGTGTAAAATCGTCTAGTACCCAAATGATGATACTATCATCATC 839
|||||| ||||||||| |||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 782 TAGCTTGTTGAAGTCGTGTGTAAAATCGTCTAGTACC-AAATGATGATACTGT-ATCATC 839
Query 840 ACACCTTGAACAATA--TA--G----G--A---TGAACTTCAACTTGAACCATTTGTTTA 886
||||||||||||||| || | | | |||| ||||||||||||||||||||||
Sbjct 840 ACACCTTGAACAATAGCTATTGTTATGTTAGGATGAAATTCAACTTGAACCATTTGTTTA 899
Query 887 TTTAGGATA-TGTTTGGCTTTGGTTTGGTTTGATT 920
|||||| || |||| || |||||||||||||||||
Sbjct 900 TTTAGG-TAATGTTCGGTTTTGGTTTGGTTTGATT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44959561565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5