BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471281
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11440.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1917 0.0
> AT1G11440.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: glycine-rich protein (TAIR:AT3G29075.1); Has 19337
Blast hits to 8589 proteins in 488 species: Archae - 26; Bacteria
- 641; Metazoa - 7852; Fungi - 2167; Plants - 955; Viruses
- 616; Other Eukaryotes - 7080 (source: NCBI BLink). |
chr1:3849360-3850662 FORWARD LENGTH=1303
Length=1303
Score = 1917 bits (1038), Expect = 0.0
Identities = 1222/1307 (93%), Gaps = 28/1307 (2%)
Strand=Plus/Plus
Query 1 TTTTCTCTCATCAACCGCAGAGATAGACTTTCAAGATCATCCTTCAAGCTCTCTCAAATG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTCTCTCATCAACCGCAGAGAAAGACTTTCAAGATCATCCTTCAAGCTCTCTCAAATG 61
Query 61 GCCAATTTCTATGAGAATTACCAGATTCCTTACGATTACAATCAGGTTAATAATCTCTAC 120
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 62 GCCAACTTCTATGAGAATTACCAGAGTCCTTACGATTACAATCAGGTTAATAATCTCTAC 121
Query 121 GATCAAAATCATTATCATTACAA-C--CAACAGCAGCAGCTTGGTTTCGAACCAATGAGT 177
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 122 GATCAAAATCATTATCATTACAATCAACAGCAGCAGCAGCTTGGTTTCGAACCAATGAGT 181
Query 178 TATAACTATTATAACTGGAATCATTCTGAATCTGAATCTGAATCTGTTGCTTACTCTGGT 237
||||| ||||| ||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 182 TATAATTATTACAACTGGAATGAATCTGAATCTGAATCTGAATATGTTGCTTACTCTGGT 241
Query 238 TATGATGATCCAATGAGTTATAATTGTTATAACTGGAATGGATCTGAGTCTGAGACAACC 297
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 242 TATGATGATCCAATGAGTTATAATTGTTATAACTGGAATGGATCCGAGTCTGAGACAACC 301
Query 298 TCTGCATCTATTGCTTACTCTGTTTCTACCATGTCTGAGCCTAAACACTTGTTCTATGAT 357
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCTGCATATGTTGCTTACTCTGTTTCTACCATGTCTGAGCCTAAACACTTGTTCTATGAT 361
Query 358 CCGAATCTCTATACAACAACCTACGAATCTCCTCCTCAGTTTAGTATCTATTGCTCTGTA 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CCGAATCTCTAT---ACAACCTACGAATCTCCTCCTCAGTTTAGTATCTATTGCTCTGTA 418
Query 418 GCCTCTGCTCTTGACTTCAACGAGCCGGAATTCGATGATTATGATCCGACGCCGTACGGT 477
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 419 GCCTCTGCTCTTGACTTCAACGAGCCGGAATTCGATGAATACGATCCCACGCCGTACGGT 478
Query 478 GGTGGCTACGACGTTGTTGCAACCTATGGAAAACCTCTTCCTCCATCGGTGGAAACTTGT 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTGGCTACGATGTTGTTGCAACCTATGGAAAACCTCTTCCTCCATCGGTGGAAACTTGT 538
Query 538 TACCCTTCTTCAACAGCTCCTCACGCTAAAGCTCCCTCTCCTCCTGAGATTATAGCTCCT 597
||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 TACCCTTGTTCAACCGCTCCTCACGCTAAAGCTCCCTCTCCTCCTGAGATTATTGCTCCT 598
Query 598 GTTCCTCTTGGAATATATGATGGTGGTCAAAAGAATGTTATCAAGAAACGTGTGTCTTTC 657
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 GTTCCTCTTGGAATTTATGATGGTGGTCAAAAGAATGTTGTCAAGAAACGTGTGTCTTTT 658
Query 658 GCTGAACCGGTagaagaagccaaaccaatggaaaccattaaagaag-aagaacaagaaca 716
||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||||
Sbjct 659 GCTGAACCGGTAGAAGAAGTCAAACCAATAGAAACCATTAAAGA-GCAAGAACAAGAACA 717
Query 717 agacgaagaagatgaagaagaaagtgagga--a-gacgatg---atgatgatga-g--ga 767
||||||||| |||| |||||||||||||| | || |||| |||||||||| | ||
Sbjct 718 AGACGAAGATTATGATGAAGAAAGTGAGGACGAAGATGATGGTGATGATGATGATGAAGA 777
Query 768 aga-g--ga------tgaggaagcaaaagaagaagaaagagatCACAGTTCAAGCTATGG 818
||| | || ||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 778 AGAAGAAGAAGGGGATGAGGAAGCTAAAGAAGAAGAAAAAGATCACAGTTCAAGCTATGG 837
Query 819 AAATGAGAAATTTGAAA-CTGTAGATAAAGGAGAAGTGAAAGCTTTGTATGTTCCGTCTG 877
||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAATGAGGAATATGAAGTC-GTAGATAAAGGAGAAGTGAAAGCTTTGTATGTTCCGTCTG 896
Query 878 GTTACGGCTTAGAAGCAACGGATCTCTGTGAGGTTATATTTGGAGGTTACTTTCCTTGTG 937
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTACGGATTAGAAGCGACCGATCTCTGTGAGGTTATATTTGGAGGTTACTTTCCTTGTG 956
Query 938 TGTTACGTAACAAAAGACGTCAGGAAGATGAACAAGATCGTGCGGCTGCTGTTTCTTGCT 997
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 TGTTACGTAACAAAAGACGTCAGGAAGATGAACAAGATCGTGGGGCTGCTGTTTCTTGCT 1016
Query 998 GGGAAAGCAACGATTCTGATCCGTGGAAGACGACTTCCGATTACCTTTTCGGGGATTCAT 1057
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1017 GGGAAAGCAACGATTCTGATCCGTGGAAGACAACTTCCGATCACCTTTTCGGGGATTCAT 1076
Query 1058 ACCCGTACGGTAACGAGAATTGGAGCGAAAGAAGTAAGTTCGAGATCTCTTCTTATGGTT 1117
| ||||||||| |||||||| |||||||||||| | |||||||| |||| ||||||||||
Sbjct 1077 ATCCGTACGGTTACGAGAATCGGAGCGAAAGAAATCAGTTCGAGGTCTCCTCTTATGGTT 1136
Query 1118 ACCGGATGTATTAACTACCCTAGTTATCATCAGATGTGACAATGTGAGGTAAGAACAACA 1177
||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1137 ACCGGATGTATTAACAACCCTAGTTATCATCAGTTGTGTCAATGTGAGGTAAGAACAACA 1196
Query 1178 TTCTTTTGATTATTGATGAACCTGATTTATTAGTATATCTTATACAAGAGATGAGATTTA 1237
|||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||
Sbjct 1197 TTCTTTTGATTATTGATGAACCTGATTTTTTAGTATCTGTTACACAAGAGATGAGATTTA 1256
Query 1238 CTGTTGTATAACGAGGAGGGATTACATAATAATAAAACTTTGCACGC 1284
|||||||||||||||||||| |||| |||||||||||| | ||||||
Sbjct 1257 CTGTTGTATAACGAGGAGGGGTTACTTAATAATAAAACGTCGCACGC 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5