BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471284

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11475.1 | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases...   619    5e-177


> AT1G11475.1 | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases 
N / 8 kDa subunit | chr1:3862399-3864030 FORWARD LENGTH=562
Length=562

 Score =  619 bits (335),  Expect = 5e-177
 Identities = 392/418 (94%), Gaps = 9/418 (2%)
 Strand=Plus/Plus

Query  1    AGCTCAAAGTTGTTCTTCACCTTTTTAAAGAAGCACGAAAC-AATAAACCCTAAAA-TCG  58
            ||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||| || 
Sbjct  14   AGCTCAAAGTTGTACTTGACCTTTTTAAAGAAGCACGAAACGAA-AAACCCTAAAATTCC  72

Query  59   CTAGCAGAG--AGAGAGAC----CAAGTACAGATTTTAGTTTGCTCAAGATGATCATCCC  112
            | |||||||  ||||||||    ||||||||||||| |  | ||||||||||||||||||
Sbjct  73   CAAGCAGAGAAAGAGAGACAGAGCAAGTACAGATTTCAACTAGCTCAAGATGATCATCCC  132

Query  113  TGTTCGTTGCTTCACTTGTGGAAAGGTGATTGGAAACAAATGGGATCAGTATCTTGATCT  172
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  133  TGTTCGTTGCTTTACTTGTGGAAAGGTGATTGGAAACAAATGGGATCAGTATCTTGATCT  192

Query  173  TCTCCAGCTCGACTACACTGAAGGGGACGCACTTGATGCGCTCCAGCTAGTCAGATACTG  232
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  193  TCTCCAGCTCGACTACACTGAAGGGGACGCACTTGATGCACTCCAGCTAGTCAGATACTG  252

Query  233  CTGCAGGCGTATGCTCATGACTCATGTTGATCTGATTGAGAAGCTTCTCAACTACAACAC  292
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  CTGCAGGCGTATGCTAATGACTCATGTTGATCTGATTGAGAAGCTTCTCAACTACAACAC  312

Query  293  TCTGGAGAAATCAGACAACAGTTAGAAGAGGATGCAAATCTGCTGAAAGTGTTTTCCTCT  352
            ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  313  TCTGGAGAAATCAGACAACAGTTAGAAGAGGATGCAAATCTGCTGAAAAAGTTTTCCTCT  372

Query  353  TTAGAGGCTTATATATTAGTATGTATGGAAACATTTGGTGTATGTGGTGCAGAACCTT  410
            ||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct  373  TTAGAGGCTTAAATATTAGTATGTATGAAAACATTTGGTGTATGTGGTGTAGACCCTT  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19403351114


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5