BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471290
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11545.1 | Symbols: XTH8 | xyloglucan endotransglucosylase/h... 1718 0.0
> AT1G11545.1 | Symbols: XTH8 | xyloglucan endotransglucosylase/hydrolase
8 | chr1:3878550-3880361 REVERSE LENGTH=1132
Length=1132
Score = 1718 bits (930), Expect = 0.0
Identities = 1075/1142 (94%), Gaps = 22/1142 (2%)
Strand=Plus/Plus
Query 1 CACTCACGGAACAAGCGTAAATTGCATTA--------TCTCTCTCTCTTCGAAATATTCG 52
||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 1 CACTCACGGAACAAGTGTAGATTGCATTACCTCTCTCTCTCTCTCTCTTCGAAATATTCG 60
Query 53 AAGCAGAGACAACCAATGGAGACGCAAAGGAGAATAATCACAAGCTGTTCTTCCATGGCC 112
||| |||||||||||||||||||| ||||||| || || || ||||||||| ||||| |
Sbjct 61 AAGTAGAGACAACCAATGGAGACGGAAAGGAGGATCATAACGAGCTGTTCTGCCATGACG 120
Query 113 GCTCTTTTCGTGTTCATGACGGCTCTAATAGCGTCTTGTTCTTCTATCACAGCAACACCG 172
||||| ||| ||||||||||||||||||| ||||| | || |||||| |||||||||||
Sbjct 121 GCTCTGTTCTTGTTCATGACGGCTCTAATGGCGTC--G-TCCTCTATCGCAGCAACACCG 177
Query 173 ACACAATCCTTTGAAGATAATTTCAACATTATGTGGTCTGAAAATCACTTCACGACTTCC 232
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACACAATCGTTTGAAGATAATTTCAACATTATGTGGTCTGAAAATCACTTCACGACTTCC 237
Query 233 GAGGATGGAGAGATCTGGAATCTTTCCTTAGACAACGACACCGGATGTGGATTTCAGACA 292
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 GATGATGGAGAGATCTGGAATCTTTCCTTAGATAACGACACCGGATGTGGATTTCAGACA 297
Query 293 AAGCACATGTATAGATTCGGATGGTTCAGTATGAAGCTTAAGCTCGTAGGCGGCGACTCC 352
|||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 298 AAGCACATGTATAGATTCGGATGGTTTAGTATGAAGCTAAAGCTCGTCGGAGGCGACTCC 357
Query 353 GCCGGCGTCGTCACCGCTTACTACATGTGTTCAGAGAATGGGGCAGGACCGGAGAGAGAC 412
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 GCCGGCGTCGTCACCGCTTACTACATGTGTTCGGAGAATGGGGCAGGACCGGAGAGAGAC 417
Query 413 GAGATAGATTTCGAATTTCTAGGGAACCGAACCGGACAGCCTTACATTATTCAGACCAAT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAGATAGATTTCGAATTTCTAGGGAACCGAACCGGACAGCCTTACATTATTCAGACCAAT 477
Query 473 GTGTATAAGAACGGAACCGGGAATCGGGAGATGCGACATTCCCTCTGGTTCGACCCGACC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTGTATAAGAACGGAACCGGGAATCGGGAGATGCGACATTCCCTCTGGTTCGACCCGACC 537
Query 533 AAGGATTACCACACCTACTCAATTCTTTGGAATAACCACCAGCTCGTCTTCTTCGTGGAT 592
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 538 AAGGATTATCACACCTACTCAATTCTTTGGAATAACCACCAGCTTGTGTTCTTCGTGGAT 597
Query 593 AGAGTACCGATTCGAGTGTACAAGAACAGTGATAAGGTACCAAACAACGATTTCTTCCCA 652
|| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 AGGGTACCAATTCGAGTATACAAGAACAGTGATAAGGTACCAAACAACGACTTCTTCCCG 657
Query 653 AACCAGAAGCCGATGTACTTGTTCTCTAGCATTTGGAACGCTGATGATTGGGCGACACGT 712
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 658 AACCAGAAGCCGATGTACTTGTTCTCCAGCATTTGGAACGCTGACGATTGGGCTACACGT 717
Query 713 GGCGGTCTCGAGAAGACTGACTGGAAAAAAGCTCCGTTCGTCTCTTCTTACAAGGACTTC 772
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 GGTGGTCTGGAGAAGACTGACTGGAAAAAAGCTCCATTCGTCTCTTCTTACAAGGACTTC 777
Query 773 GCCGTCGAAGGCTGCCGTTGGAAGGATCCATTCCCTGCATGCGTCTCCACCACAACAGAT 832
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 778 GCCGTCGAAGGCTGCCGTTGGAAGGATCCATTCCCTGCATGCGTCTCTACCACAACAGAG 837
Query 833 AATTGGTGGGATCAGTACGACGCATGGCATTTGTCCAAGACACAGAAGATGGATTATGCG 892
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 AATTGGTGGGATCAGTACGACGCGTGGCATTTGTCCAAGACACAGAAGATGGATTATGCG 897
Query 893 TGGGTGCAGCGTAATCTCGTCGTATACGATTATTGCAAAGACAGTGAGAGGTTCCCTACT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGGGTGCAGCGTAATCTCGTCGTATACGATTATTGCAAAGACAGTGAGAGGTTCCCTACT 957
Query 953 CTTCCTTGGGAGTGTTCCATTAGCCCTTGGGCTTAAAATCAATTTTGTTTTTTGAGTGTA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 CTTCCTTGGGAGTGTTCCATTAGCCCTTGGGCTTAAAATCAATTTTGTTTT--GAGTGTA 1015
Query 1013 TTAATTCAGTGGAAATGGTTAATGTAATAATTTTAC-Ct-ttttttt-gt-atttcttat 1068
|||| ||||||||||||| ||||||||||||||| || ||||||| | |||||||||
Sbjct 1016 TTAA---AGTGGAAATGGTTTATGTAATAATTTTACTCTCTTTTTTTTGGCATTTCTTAT 1072
Query 1069 tttgttatggattatatatcctctgtttatttatttaattaattatttattCAGTCGGCT 1128
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1073 TTTGTTATGGACTATAT--CCTCTGTTTATTTATTTAATTAATTATTTATTTAGTCGGCT 1130
Query 1129 AT 1130
||
Sbjct 1131 AT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5