BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471298
Length=1748
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11600.1 | Symbols: CYP77B1 | cytochrome P450, family 77, su... 2784 0.0
> AT1G11600.1 | Symbols: CYP77B1 | cytochrome P450, family 77,
subfamily B, polypeptide 1 | chr1:3902012-3903782 FORWARD LENGTH=1771
Length=1771
Score = 2784 bits (1507), Expect = 0.0
Identities = 1668/1747 (95%), Gaps = 6/1747 (0%)
Strand=Plus/Plus
Query 1 CTAACATTCTTCTTTATTTATCTCCCAtctctctctctctctTCAAATCATAACAAACAT 60
|||||||||||||| | |||||||||| ||| | ||||||||| ||| |||| ||||||
Sbjct 26 CTAACATTCTTCTTCACTTATCTCCCA--TCT-T-TCTCTCTTC-AATAATAATAAACAT 80
Query 61 GAATCTTACCGACGTTATCATATTCTTGTTCGCTCTCTATTTCATCAACCTATGGTGGCG 120
| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GGATCTCACCGACGTAATCATATTCTTGTTCGCTCTCTATTTCATCAACCTATGGTGGCG 140
Query 121 CCGGTACTCTTCAGCCGGAAGCAGCCAGTGTCGCTTGAACATCCCACCGGGGCCAAAAGG 180
|||||||| ||| |||||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 141 CCGGTACTTTTCCGCCGGAAGCAGCCAGTGTAGCTTGAACATTCCACCGGGACCAAAAGG 200
Query 181 ATGGCCACTAGTCGGAAACCTACTCCAAGTCATACTCCAACGTCGCCATTTCGTCTTCCT 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 201 ATGGCCACTAGTCGGAAACCTACTCCAAGTCATATTCCAACGTCGCCATTTCGTCTTCTT 260
Query 241 AATGCGTGGCCTACGTAAAAAGTATGGTCCAATATTCACCATGCAAATGGGACAACGTAC 300
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 261 AATGCGTGACCTACGTAAAAAGTATGGTCCAATATTCACCATGCAGATGGGACAACGTAC 320
Query 301 GATGATTATTATCACGGACGAAAAACTCATCCACGAGGCACTAGTCCAACGCGGCCCCAC 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 321 GATGATTATCATCACGGACGAAAAACTCATCCACGAGGCACTAGTCCAACGCGGCCCTAC 380
Query 361 ATTCGCTTCCCGGCCTCCTGACTCGCCGATCCGGCTCATGTTTAGTGTCGGGAAATGCGC 420
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 381 ATTCGCTTCCCGGCCTCCGGACTCGCCGATCCGGCTCATGTTTAGTGTTGGGAAATGCGC 440
Query 421 TATAAACTCGGCGGAGTACGGATCTTTGTGGAGGACTCTGAGGAGGAACTTTGTGACAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TATAAACTCGGCGGAGTACGGATCTTTGTGGAGGACTCTGAGGAGGAACTTTGTGACAGA 500
Query 481 GCTAGTGACGGCGCCCAGAGTGAAGCAGTGCTCGTGGATTCGGACTTGGGCTATGCAGAA 540
||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 501 GCTAGTGACCGCGCCGAGAGTGAAGCAGTGCTCGTGGATAAGGAGTTGGGCTATGCAGAA 560
Query 541 TCATATGAAGAGGATTAAAACGGAGAATGTTGAGAAAGGTTTCGTGGAGGTTATGAGCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TCATATGAAGAGGATTAAAACGGAGAATGTTGAGAAAGGTTTCGTGGAGGTTATGAGCCA 620
Query 601 ATGTAGGCTAACGATTTGTAGCGTCTTGATCTGTCTTTGTTTCGGTGCCAAGATCAGCGA 660
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 621 ATGTAGGCTAACGATTTGTAGTATCTTGATCTGTCTTTGTTTCGGTGCCAAGATCAGCGA 680
Query 661 GGAAAAGATTAAGAACATTGAGAATGTTCTTAAGGACGTTATGCTTATAACTTCTCCGAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GGAAAAGATTAAGAACATTGAGAATGTTCTTAAGGACGTTATGCTTATAACTTCTCCGAC 740
Query 721 GTTACCTGACTTTTTGCCGGTTTTTACTCCGTTGTTTCGGCGTCAAGTAAGAGAAGCGAG 780
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 741 GTTACCTGACTTTTTGCCGGTTTTCACTCCGTTGTTTCGGCGTCAAGTTAGAGAAGCTAG 800
Query 781 AGAGCTGAGGAAGACGCAGCTCGAGTGTCTAGTGCCATTGATAAGAAACCGTCGTAAGTT 840
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 801 AGAGCTGAGGAAGACGCAGCTCGAGTGTCTCGTGCCGTTGATAAGAAACCGTCGTAAGTT 860
Query 841 CGTTGATGCAAAGGAGAGTCCTAACGAAGAGATGGTTAGTCCGATTGGTGCAGCTTATGT 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CGTTGATGCAAAGGAGAATCCTAACGAAGAGATGGTTAGTCCGATTGGTGCAGCTTATGT 920
Query 901 GGATTCTTTGTTTGGTTTGAACCTGATCGAGAGAGGTGGTGAGCTTGGAGATGAAGAGAT 960
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 921 GGATTCTTTGTTTCGTTTGAACTTGATCGAGAGAGGTGGTGAGCTTGGAGATGAAGAGAT 980
Query 961 AGTGACGTTGTGTTCGGAGATTGTCTCGGCCGGTACGGACACGAGTGCAACGACGCTAGA 1020
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 981 TGTGACTTTGTGCTCGGAGATTGTCTCTGCCGGTACGGACACGAGTGCAACGACGCTTGA 1040
Query 1021 ATGGGCTTTACTTCATCTAGTGACCGACCAAAGCATTCAAGAGAAGCTATACGAGGAAGT 1080
|||||| ||| ||||||||||||| ||||||| ||||||||||||| |||| ||||||||
Sbjct 1041 ATGGGCGTTATTTCATCTAGTGACTGACCAAAACATTCAAGAGAAGTTATATGAGGAAGT 1100
Query 1081 TGTTGGAGTTGTTGGCAAAAACGGCGTCGTTGAAGAAGATGACGTGGCGAAAATGCCCTA 1140
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1101 TGTTGGAGTTGTTGGCAAAAACGGCGTCGTTGAAGAGGATGACGTGGCGAAAATGCCTTA 1160
Query 1141 TTTGGAAGCCATTGTGAAAGAGACTCTCCGACGACATCCTCCTGGTCATTTTCTTCTCTC 1200
||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1161 TTTAGAAGCCATCGTGAAAGAGACTCTCCGACGACATCCTCCGGGACATTTTCTTCTCTC 1220
Query 1201 TCACGCCGCCGTGAAAGACACGGAGCTAGGAGGGTACGATATTCCGGCAGGGGCATATGT 1260
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1221 TCACGCCGCCGTGAAAGACACGGAGCTAGGAGGGTATGATATTCCGGCAGGGGCGTATGT 1280
Query 1261 GGAAATTTACACTGCTTGGGTTACTGAGAACCCGGAGATTTGGTCGGATCCTGGTAAGTT 1320
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1281 GGAAATTTACACTGCTTGGGTTACTGAGAACCCGGATATTTGGTCGGATCCTGGTAAGTT 1340
Query 1321 TCGACCCGAGAGGTTTTTAACCGGTGGGGACGGTGTTGATGCTGACTGGACCGGGACACG 1380
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1341 TCGACCCGAGAGGTTTTTAACCGGTGGGGACGGGGTTGATGCTGACTGGACGGGGACACG 1400
Query 1381 TGGCGTTACAATGTTGCCTTTTGGTGCGGGTCGTAGGATCTGCCCGGCTTGGTCTTTGGG 1440
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1401 TGGTGTTACAATGTTGCCTTTTGGTGCGGGTCGTAGGATCTGCCCGGCTTGGTCTTTAGG 1460
Query 1441 GATTCTACACATCAACTTGATGCTTGCTAGGATGATCCATTCGTTTAAATGGATCCCGGT 1500
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1461 GATTCTGCACATCAACTTGATGCTTGCAAGGATGATCCATTCGTTTAAATGGATCCCGGT 1520
Query 1501 TCCGGATTCTCCACCCGACCCGACTGAGACTTACGCCTTCACGGTGGTGATGAAAAATTC 1560
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1521 TCCGGATTCTCCACCCGACCCGACTGAGACGTACGCCTTCACGGTCGTTATGAAAAATTC 1580
Query 1561 TCTCAAAGCCCAAATCATGTCAAGGACTTAATGGATATGTTTAGTTTTTGTATGCGTGTG 1620
||||||||| ||||||| ||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1581 TCTCAAAGCGCAAATCAGGTCAAGGACCTAACGGATATGTTTAGTTTTTGTAAGCGTGTG 1640
Query 1621 GGGTAATTAAAAGTTATAATTCCTTAGTACGTTACATTAATCTTTGCTATTTTTAATGTT 1680
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1641 GGGTAATTAAAAGTTATAATTCCTTAGTACGTCACATTAATCTTTGCTATTTTTAATGTT 1700
Query 1681 GTTTATGTGCTATCTTTATCTATTTTCAAGGAGTGTAAAATATATATAATCATATGCTGT 1740
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1701 GTTTATGT-CTATCTTTATCTATTCTCAAGGAGTGTAAAATATATATAATCATATGCAGT 1759
Query 1741 TTCGGTT 1747
||| |||
Sbjct 1760 TTCTGTT 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86445338490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5