BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471300
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2169 0.0
AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 | ... 747 0.0
> AT1G11630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:3912902-3914407 REVERSE LENGTH=1506
Length=1506
Score = 2169 bits (1174), Expect = 0.0
Identities = 1405/1511 (93%), Gaps = 37/1511 (2%)
Strand=Plus/Plus
Query 1 ATCATGAACCCTAGTAATGGCGTTCCTCTTCCGCATTCGAACATCGGAATCTCTAGTCCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 7 ATCATGAACCCTAGTAATGGCGTTCCTCTTCCGCATTCGAACATCGGAATTTATACTCCA 66
Query 61 GAACGTGACTCAATTCCGATTGCAA-TCTTCTTCTTCATCTATCGTCACACTAAAATCTC 119
||| | |||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 67 GAAAGCGACTCAATTCCGATTG-AAGTCTTCTTCTTCATCTATCTTCACACTAAAATCTC 125
Query 120 TCACTAGCAAGCAGAAGAAGAGTCGAGCTACTCTCTCCCTTCTCAAATCCGAGAATAATC 179
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 126 TCACTAGCAAGCAGAAGAAGAGCCGAGATACTCTCTCCCTTCTCAAATCCGAGAATAATC 185
Query 180 C-GAATCGGATCCTCGAAATTTGCCGATCCGCTTCCCTCACGCCTGATTATCACGTGGAC 238
| | |||| ||||||||||| ||||||||| |||| ||| | |||||||||||||| |||
Sbjct 186 CTG-ATCGAATCCTCGAAATCTGCCGATCCACTTCACTCTCACCTGATTATCACGTCGAC 244
Query 239 CGTATCATCTTCTCCGTCGCGGTGGTGACACTAGCGAAAGAGAAACACTTCGTCGCTGTG 298
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 245 CGTATCATCTTCTCCGTTGCGGTGGTGACACTAGCGAGAGAGAAACACTTCGTCGCTGTA 304
Query 299 TCGCAGCTTCTCGACGGTTTCATCCAAAACCAACCCGATCCAAAATCCGAGAGTTTCGCA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCGCAGCTTCTCGACGGTTTCATCCAAAACCAACCCGATCCAAAATCCGAGAGTTTCGCA 364
Query 359 GTCCGCGCCATTATCTTATACGGTC-GAGCGAATATGCTTGATCGATCTATACAAACATT 417
||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 365 GTCCGTGCCATTATCCTATACGG-CAGAGCGAATATGCTTGATCGATCTATACAAACATT 423
Query 418 TCGTGACCTCGAGCAATACGAGATCCCGAGGACGGTGAAGTCTTTGAATGCTCTTCTTTT 477
||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 424 TCGCAACCTCGAGCAATACGAGATCCCAAGGACGGTGAAGTCTCTAAATGCTCTTCTTTT 483
Query 478 TGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTGTACCTCGAAATGCCGAA 537
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 484 CGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTCTACCTCGAAATGCCGAA 543
Query 538 GATTTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGATTAGAGTCTTGTGTGA 597
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GATGTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGATTAGAGTCTTGTGTGA 603
Query 598 ATCAGGTTCAACGAGTTTATCATACTCCATTGTTGCAGAGATGGAGAGGAAATGGGTAAA 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 604 ATCAGGTTCAACGAGTTCATCATACTCCATTGTTGCAGAGATGGAGAGGAAATGGATAAA 663
Query 658 GCCAACAGCTTCAAGTTTTGGGTTAATGATTGATGGTTTTTACAAGGAGGAGAAGTTTGA 717
|||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 664 GCCAACAGCTGCTAGCTTTGGTTTAATGATTGATGGTTTTTACAAGGAGGAGAAGTTTGA 723
Query 718 TGATGTGAGGAAAGTGATGAGAATGATGGATGAATTTGGTGTTCATGTTGGTGTTGCTAC 777
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 724 TGAAGTGAGGAAAGTGATGAGAATGATGGATGAATTTGGTGTTCATGTTGGTGTAGCTAC 783
Query 778 TTACAACATTATGATTCAGTGTTTGTGTAAAAGGAAGAAATCTGCAGAAGCAAAGGCGTT 837
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ATACAACATTATGATTCAATGTTTGTGTAAAAGGAAGAAATCTGCAGAAGCAAAGGCGTT 843
Query 838 GATTGATGGGGTTATGTCTTGTAGGATGAGACCGAATTCGGTGACTTATTCGCTTTTGAT 897
||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct 844 GATTGATGGGGTTATGTCTTGTAGGATGAGACCAAACTCTGTGACGTATTCGCTTTTGAT 903
Query 898 TCATGGGTTTTGCAGTGAGGAGAATTTGGATGAAGCTATGAATTTGTTTGAGGTTATGGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TCATGGGTTTTGCAGTGAGGAGAATTTGGATGAAGCTATGAATTTGTTTGAGGTTATGGT 963
Query 958 GTATAGTGGGTATAAGCCTGATAGTGAATGTTACTTCACTTTGATACATTGCTTGTGTAA 1017
|| || ||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 964 GTGTAATGGATACAAGCCTGATAGTGAATGTTACTTCACTTTGATACATTGTTTGTGTAA 1023
Query 1018 AGGTGGGGACTTTGAGACAGCTTTGATCCTTTGTAGGGAGAGTATGGAGAAGAATTGGGT 1077
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1024 AGGAGGGGACTTTGAGACAGCTTTGATCCTTTGTAGAGAGAGTATGGAGAAGAATTGGGT 1083
Query 1078 TCCGAGTTTTAGTATCATGAAGTGGCTTTTTAATGGACTAGCAAGTCGTTCAAAGGTCGA 1137
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1084 TCCGAGTTTTAGTGTCATGAAGTGGCTTGTTAATGGACTAGCAAGTCGTTCAAAGGTCGA 1143
Query 1138 TGAAGCAAAGGAACTCATTGTGCAAGTAAAAGAGAAGTTTACCAGAAATGTTTATTTGTG 1197
|||||||||||| ||||||| | ||| ||||||||||||||||||||||| | |||||
Sbjct 1144 TGAAGCAAAGGAGCTCATTGCGGTAGTTAAAGAGAAGTTTACCAGAAATGTGGACTTGTG 1203
Query 1198 GAATGAAGTCGAAGCTGCATTGCCT---C---AGTGAACAA-GGTACACATAGAAAAAGG 1250
||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||
Sbjct 1204 GAATGAAGTCGAAGCTGCATTGCCTTTGCCTCAGTGAACAAAGGTACACATAGAAGAAG- 1262
Query 1251 TCATTCGTCTTCGATTTGATATGAGGATTTGAAGTTTT-GAGATTGGTTAGTTTAGC--A 1307
|||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 1263 TCATTCATCTTCGATTTGACATGAGGATTTGAAGTTTTTGAGATTGGTTAGTTTAGCTGA 1322
Query 1308 ---CA------AA--TTGAAATGAAAGGGGATA--GTTTGAAGAGAATCTTGTCGTTGAG 1354
|| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1323 AATCATCTGTCAAAATTGAAATGAAAGGGGATATAGTTTGAAGAGAATCTTGTCGTTGAG 1382
Query 1355 ATTAAGTAGCTATATATCACTAAGAATTGGTGCTGGTGAATTATCAATTTTCTTACTGAA 1414
|||||| |||||| | || |||| |||||||||||||||||||||||||||||||||||
Sbjct 1383 ATTAAGAAGCTATCTCTC--TAAGGATTGGTGCTGGTGAATTATCAATTTTCTTACTGAA 1440
Query 1415 ATTTTTTAAACATGTTGTATATAAATGGAATGGAATGTAACATTTTTCAATATATCGTAA 1474
|||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 1441 TTTTTTTGAACATGTTGTATATAAATGGAATG---T--AACATTTTTCAATATATCGGAA 1495
Query 1475 ACGATGAGCCT 1485
|||||||||||
Sbjct 1496 ACGATGAGCCT 1506
> AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336
| chr1:22865004-22866615 REVERSE LENGTH=1612
Length=1612
Score = 747 bits (404), Expect = 0.0
Identities = 912/1149 (79%), Gaps = 68/1149 (6%)
Strand=Plus/Plus
Query 117 CTCTCACTAGCAAGCAGAAGAAGAGTC-GAGCTA-CTCTCTCCCTTCTCAAATCCGAGAA 174
||||||| ||||| |||| || || | ||| | ||||||| |||||||||||||||||
Sbjct 182 CTCTCACAAGCAA--AGAA-AAAAG-CAAAGC-AGCTCTCTCTCTTCTCAAATCCGAGAA 236
Query 175 TA-ATCCGA-ATCGGATCCTCGAAATTTGCCGAT-CCGCTTCCCTCACGCCTGATTATCA 231
| |||| | |||| ||||||||||| ||||| | | ||||| || || || |||| |
Sbjct 237 -AGATCC-AGATCGTATCCTCGAAATCTGCCG-TGCAGCTTCTCTTACTCCAGATTGCCG 293
Query 232 CGTGGACCGTATCATC-TTCTCCGTCGCGGTGGTGACA-CTAG-CGAAAGAGAAACACTT 288
| | || || ||| | ||||||| ||| || | || | || | ||| | ||||||| ||
Sbjct 294 CATAGATCGAATC-GCTTTCTCCGCCGCCGTCGAGA-ATCTCGCCGAGA-AGAAACATTT 350
Query 289 CGT-CGCTGTGTCGCAGCTTCTCGACGGTTTCATCCAAAACCA-ACCCGATC-CAAAATC 345
| | |||||| ||| | || |||||||| |||||| |||| || ||| |||| | |||||
Sbjct 351 C-TCCGCTGTATCGAATCTCCTCGACGGATTCATCGAAAA-CAGACCAGATCTC-AAATC 407
Query 346 CGAGA-GTTTCGCAGTC-CGCGCCATTATCTTATACGGTCGAGCGAATATGCTTGATCGA 403
|| | |||| || | | | ||||||| | || || | || ||| ||||||||||||| |
Sbjct 408 GGA-ACGTTTTGCTG-CTCACGCCATTGTTTTGTATGCTCAAGCTAATATGCTTGATC-A 464
Query 404 -TCTATACA-AACATTTCGTGACCTCGAGCAATACGAGATCCCGAGGACGGTGAAGTCTT 461
||| || | | |||||||| |||||| ||| ||| ||| | | |||||||||||||
Sbjct 465 CTCTTTA-AGAGTTTTTCGTGATCTCGAGAAATTCGAAATCTCTCGTACGGTGAAGTCTT 523
Query 462 TGAATGCTCTTCTTTTTGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTGT 521
| || || ||||| |||||||||||| | |||||||||||||||||||| || | || |
Sbjct 524 TAAACGCGCTTCTCTTTGCTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTT 583
Query 522 ACCTCGAAATGCCGAAGATTTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGA 581
|| | || ||||| ||||| ||||| ||||||||||||||||| ||||| ||| | ||||
Sbjct 584 ACATTGAGATGCCTAAGATGTATGGAATTGAACCTGATCTCGAGACTTATAATCGTATGA 643
Query 582 TTAGAGTCTTGTGTGAATCAGGTTCAACGAGTTTATCATACTCCATTGTTGCAGAGATGG 641
| | ||| || |||||||| |||||| |||||| || |||||||||||||| |||||||
Sbjct 644 TCAAAGTGTTTTGTGAATCCGGTTCAGCGAGTTCGTCGTACTCCATTGTTGCGGAGATGG 703
Query 642 AGAGGAAATGGG-TAAAGCC-AACAGCTTCAAGTTTTGGGTTAATGATTGAT-GGTTTT- 697
|||||||| ||| ||||||| || || |||||| ||||| || |||||| | ||||||
Sbjct 704 AGAGGAAA-GGGATAAAGCCGAATAG-TTCAAGCTTTGGTTTGATGATTTCTGGGTTTTA 761
Query 698 TACAAGGAGGAGAAGTTTGATGATGTGA-GGAAAGTGAT-GAGAATGATGGATGAAT-TT 754
| | | ||||| ||| |||||| || | |||||||| | | | |||||| | | || |
Sbjct 762 TGC-A-GAGGATAAGAGTGATGAAGT-AGGGAAAGTGTTGGCG-ATGATGAAAG-ATCGT 816
Query 755 GGTGTTCATGTTGGTGTTGCTACTTACAACATTATGATTCAGTGTTTGTGTAAAAGGAAG 814
|||||| || | |||||| | ||||| ||||||| ||||||| |||||||||| ||||||
Sbjct 817 GGTGTTAATATCGGTGTTTCGACTTATAACATTAGGATTCAGAGTTTGTGTAAGAGGAAG 876
Query 815 AAATCTGCA-GAAGCAAAGGCGTTGATTGATGGG--GTTATGTCTTGTA-GGATGAGACC 870
|||||| | ||||| ||||| ||| |||||||| |||| || || | |||||| |||
Sbjct 877 AAATCT-AAGGAAGCGAAGGCTTTGCTTGATGGGATGTTA--TC-TGCAGGGATGAAACC 932
Query 871 GAATTCGGTGACTTATTCG-CTTTTGATTCATGGGTTTTGCAGTGAGGA-GAATTTGGAT 928
|||| |||| || || | | | ||||||||| |||||||| | ||| || | |||| ||
Sbjct 933 GAATACGGTAACGTA-TAGCCATTTGATTCACGGGTTTTGTAATGAAGATG-ATTTCGAG 990
Query 929 GAAGCTATGAATTTGTTTGAGGTTATGGTGTATAGTGGGTATAAGCCTGATAGTGAATGT 988
||||| | ||| |||||| || |||||||| | || || | ||||||||||||||| |||
Sbjct 991 GAAGCGAAGAAGTTGTTTAAGATTATGGTGAACAGAGGATGTAAGCCTGATAGTGAGTGT 1050
Query 989 TACTTCACT-TTGATACATTGCTTGTGTAAAGGTGGGGACTTTGAGACAGCTTTGA-TCC 1046
||||||||| || ||| ||| ||| || ||||| || ||||||||||| ||||||| | |
Sbjct 1051 TACTTCACTCTT-ATATATTACTTATGCAAAGGAGGAGACTTTGAGACGGCTTTGAGT-C 1108
Query 1047 TTTGTAGGGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTATCATGAAGTGGCTTT 1106
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1109 TTTGTAAAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTATCATGAAGTCGCTTG 1168
Query 1107 TTAATGGACTAGC-AAGTCGTTC-AAAGGTCGATGAAGCAAAGGAACTCATTGTGCAAGT 1164
|||| |||||||| ||| ||| |||| |||| ||||||||||| || |||| ||||||
Sbjct 1169 TTAACGGACTAGCTAAGGA-TTCGAAAG-TCGAAGAAGCAAAGGAGCTTATTGGGCAAGT 1226
Query 1165 AAAAGAGAAGTTTACCAGAAATGTTTATTTGTGGAATGAAGTCGAAGCTGCATTGCCTCA 1224
||||||||||| || ||||| ||| | |||||||| ||||||||||| ||||| || ||
Sbjct 1227 GAAAGAGAAGTTCACTAGAAACGTTGAGTTGTGGAACGAAGTCGAAGCCGCATTACCGCA 1286
Query 1225 GTGAA-CAA 1232
|||| |||
Sbjct 1287 ATGAATCAA 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5