BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471301
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/... 2320 0.0
> AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914774-3918176 FORWARD
LENGTH=1574
Length=1574
Score = 2320 bits (1256), Expect = 0.0
Identities = 1470/1565 (94%), Gaps = 47/1565 (3%)
Strand=Plus/Plus
Query 1 AACAATCTCTCCTCTTTAGCTTTGTTTTGTTATCTTCTTCTTCATCACAATTTTTCTACG 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 13 AACAATCTCTCATCTTTAGCATTGTTTTGTTATCTTCTTCTTCATCACAATTTTTCTACG 72
Query 61 GTCAGAGATTC-AAAGAGTTTCTCTATCT-TCT-TCTTATTCTCCGATCATCATGATGCA 117
||||||||||| |||||| |||| | ||| ||| ||||||||||||||||||||||||||
Sbjct 73 GTCAGAGATTCAAAAGAG-TTCT-T-TCTCTCTATCTTATTCTCCGATCATCATGATGCA 129
Query 118 GCAGCCACCACCCGGAGGTATCCTTCCACATCACATTCCTCCTCCTTCTGGGCAACAACA 177
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 130 GCAGCCACCACCCGGAGGTATCCTTCCACATCACGCTCCTCCTCCTTCTGCGCAACAACA 189
Query 178 GTACGGTTACCAACAACCTTCTCCTTACGGGATTGCTGGTGCTGCTCCACCACCACCACA 237
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 190 GTACGGTTACCAACAA------CCTTACGGGATTGCTGGAGCTGCTCCACCACCACCACA 243
Query 238 GATGTGGAATCCTCAAGCGGCGGCGCCGCCATCAGCTCAGCCTACGACTGCCGACGAGAT 297
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 244 GATGTGGAATCCTCAAGCGGCGGCGCCGCCATCAGTTCAGCCTACGACCGCTGACGAGAT 303
Query 298 CCGGACTCTTTGGATCGGGGACTTACAGTATTGGATGGATGAGAATTTCCTCTACGGTTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CCGGACTCTTTGGATCGGGGACTTACAGTATTGGATGGATGAGAATTTCCTCTACGGTTG 363
Query 358 CTTTGCTCATACCGGAGAAATGGTTTCTGCTAAAGTAATTCGTAACAAGCAAACCGGTCA 417
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 364 CTTTGCTCATACCGGAGAGATGGTTTCTGCTAAAGTGATTCGTAACAAGCAAACCGGTCA 423
Query 418 AGTTGAAGGATACGGTTTCATTGAGTTCGCATCTCATGCTGCTGCTGAAAGAGTTCTACA 477
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 424 AGTTGAAGGATACGGTTTCATTGAATTCGCATCTCATGCTGCTGCTGAAAGAGTTCTACA 483
Query 478 AACATTCAACAACGCTCCTATCCCGAGCTTTCCTGATCAGCTCTTTAGATTGAACTGGGC 537
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 484 AACATTCAACAACGCTCCTATCCCGAGCTTTCCTGATCAGCTCTTTAGACTGAACTGGGC 543
Query 538 GTCATTGAGTTCAGGAGATAAACGAGATGATTCACCGGACTACACGATATTTGTCGGTGA 597
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 544 ATCATTGAGTTCAGGAGATAAACGAGACGATTCACCGGACTACACGATATTTGTCGGTGA 603
Query 598 TCTGGCTGCTGATGTTACGGATTATATCTTACTTGAGACGTTCAGAGCCTCTTATCCGTC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCTGGCTGCTGATGTTACGGATTATATCTTACTTGAGACGTTCAGAGCCTCTTATCCGTC 663
Query 658 AGTGAAGGGTGCAAAGGTTGTTATTGACAGAG-CTACTGGGCGTACAAAGGGATATGGTT 716
|||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||| |
Sbjct 664 AGTGAAGGGTGCAAAGGTTGTTATTGACAGAGTC-ACTGGACGTACAAAAGGATATGGGT 722
Query 717 TTGTTAGGTTTTCTGATGAGAGTGAACAGATTCGTGCTATGACGGAGATGAATGGTGTTC 776
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 723 TTGTTAGGTTTTCTGATGAAAGTGAACAGATCCGTGCTATGACGGAGATGAATGGCGTTC 782
Query 777 CTTGTTCTACTAGACCTATGAGAATTGGTCCAGCTGCTAGCAAAAAAGGTGTTACTGGTC 836
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 783 CTTGTTCTACTAGACCTATGAGAATTGGTCCCGCTGCTAGCAAGAAAGGTGTAACTGGTC 842
Query 837 AGAGAGATTCATACCAGAGCTCTGCTGCAGGGGCACCAACTGATAATGATCCAAATAACA 896
| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 843 AAAGAGATTCATACCAGAGCTCTGCTGCAGGGGTAACAACTGATAATGATCCAAATAACA 902
Query 897 CAACTGTTTTTGTTGGTGGATTAGAT-CAATCTGTCACGGATGATCATCTGAAGAATGTC 955
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 903 CAACTGTTTTTGTTGGTGGATTAGATGCA-TCTGTCACGGATGATCATCTGAAGAATGTC 961
Query 956 TTTGGCCAATATGGTGAGATTGTGCATGTGAAAATACCCGCCGGAAAGCGCTGTGGATTC 1015
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 962 TTTAGCCAATATGGTGAGATTGTGCATGTGAAAATACCCGCTGGAAAGCGCTGTGGATTC 1021
Query 1016 GTTCAATTTTCTGAGAAAAGCTGTGCAGAGGAAGCTCTTAGAATGCTGAATGGAGTGCAA 1075
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GTTCAGTTTTCCGAGAAGAGCTGTGCAGAGGAAGCTCTTAGAATGCTGAATGGAGTGCAA 1081
Query 1076 TTGGGCGGAACAACCGTCAGGCTCTCATGGGGCCGAAGTCCTTCGAACAAACAGTCAGCG 1135
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1082 TTAGGCGGAACAACCGTCAGGCTCTCATGGGGCCGAAGTCCTTCGAACAAACAGTCGGGG 1141
Query 1136 GATCCCAGCCAGTTTTATTACGGCGGGTATGGACAAGGACAGGAGCAGTATGGGTACACG 1195
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1142 GATCCGAGCCAGTTTTACTACGGTGGGTATGGACAAGGACAGGAGCAGTATGGGTACACG 1201
Query 1196 ATGCCACAAGACCCTAATGCATATTACGGAGGCTACTCTGGTGGAGGAGGATACAGTGGT 1255
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1202 ATGCCTCAAGACCCTAATGCATATTACGGAGGCTACTCTGGTGGAGGA---TACAGCGGT 1258
Query 1256 GGTTaccagcagacaccacaagcaggacagcaaccaccacaacagccaccacagcagcaa 1315
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGTTACCAGCAGACACCACAGGCAGGACAGCAACCACCACAACAGCCACCACAGCAGCAA 1318
Query 1316 caaGTCGGGTTTAGCTACTAACTCCGAGAGTATTTCTTGGGTTAATGTCACTCTGCTTGT 1375
|||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 1319 CAAGTCGGGTTTAGCTACTAACCCCGAGAGTATTGCTTGAGTTAATGTCACTCTGCTTGT 1378
Query 1376 TGTTTGCGTACTTTGTTATGAACTTGTTTCTGCGTGC-TT-T---GA-TATTT------- 1422
||||||||||||||||||||||||||||||||||||| || | || |||||
Sbjct 1379 TGTTTGCGTACTTTGTTATGAACTTGTTTCTGCGTGCCTTGTTATGAATATTTTCCCAAA 1438
Query 1423 ----GT--------CTTTG-TTTTCTCTAGGTGTGT-T-GAATTTTTCACTCATAATAAT 1467
|| ||||| |||||||||||||||| | || ||||| |||| |||||||
Sbjct 1439 CACAGTTTATTTGTCTTTGCTTTTCTCTAGGTGTGTGTTGAGTTTTTAACTCTTAATAAT 1498
Query 1468 GTTTCTGCGATGCTTCTGTTTTAAATGTTTTCATCACCTTTTGAAAGAACGTAAGCGTTG 1527
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1499 GTTTCTGCGATGCTTCTGTTTTTAATGTTTTCATCACCTTTTGAAAGAACGTAAGCGTTG 1558
Query 1528 ATTAT 1532
|||||
Sbjct 1559 ATTAT 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75602020770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5