BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471303

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11655.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   686    0.0  


> AT1G11655.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G21902.1); 
Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3919272-3919774 
FORWARD LENGTH=503
Length=503

 Score =  686 bits (371),  Expect = 0.0
 Identities = 457/496 (92%), Gaps = 16/496 (3%)
 Strand=Plus/Plus

Query  1    TCTCTCTCTGATCACACTACCTTCTCTTCCAAAAGTCGTCGTCGGGAAAACACAAAAGGA  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  2    TCTCTCTCTGATCACACTACCTTCTCTTCCAAAAGTCGTCGCCGGGAAAACACAAAAAGA  61

Query  61   CGAAAATGACCCTCTTCAAGAGGCCATGTCCTTACTCAAAGATGGACAAGGAAGATCCAG  120
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  62   CGAAAATGACCCTATTCAAGAGGCCATGTCTTTACTCAAAGATGGACAAGGAAGATCCAG  121

Query  121  AAGAGGTACTTAGCCGACGAGCCAAGTTCTTGATTTACAAAACACTTCAAGAAGCCGATT  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  122  AAGAGGTACTTAGCCGACGAGCCAAGTTCTTGATTTACAAAACACTTCAAGAAGCCGACT  181

Query  181  TGGTTTCGCGGCGTGATCCTCATTCGTCGTTTCTACGGCTGAAGCTTTATCTGTTGAAGG  240
            || |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  182  TGATTTCTCGGCGTGATCCTCATTCGTCGTTTATACGGCTGAAGCTTTATCTGTTGAAGG  241

Query  241  TCAAGATCGGAAAGAGGTTGACTAATCTACGCCGAACCGTAGTATCCGCCGTTAGATTTG  300
            |||||||||||||||||||| |||| |||||||| |  ||||||||||||||||||||||
Sbjct  242  TCAAGATCGGAAAGAGGTTGGCTAAGCTACGCCGGAGTGTAGTATCCGCCGTTAGATTTG  301

Query  301  GCGGAATTCGAAAACATTCTCATAACGGCGTAAGAGCGTTGAAGAAGCTGTTCCACGGTG  360
            ||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||| ||||
Sbjct  302  GCGGAATTCGAAAGCATTCTCATAATGGCGTGAGAGCGTTGAAGAAGATGTTCCAAGGTG  361

Query  361  GTGCAACAACTGGACTACCTAGGCCTATTTTCACTCTTGAAGTTTGA--T---Attt---  412
            |||||||||||||||||||||||||||||||| | ||||||||||||  |   ||||   
Sbjct  362  GTGCAACAACTGGACTACCTAGGCCTATTTTCTCCCTTGAAGTTTGAAATTTCATTTATT  421

Query  413  -------cttgttttgtgtaatttttttt-cttttgtttctggagtttctttttatctct  464
                   |||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct  422  TATATTTCTTGTTTTGTGTAATTTTTTTTTCTTTTGTTTCCGGAGTTTCTTTTGATCTCT  481

Query  465  tttACAAAAGTTTATC  480
             |||||||||||||||
Sbjct  482  ATTACAAAAGTTTATC  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5