BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471309
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11700.1 | Symbols: | Protein of unknown function, DUF584 |... 1092 0.0
AT1G61930.1 | Symbols: | Protein of unknown function, DUF584 |... 342 3e-93
> AT1G11700.1 | Symbols: | Protein of unknown function, DUF584
| chr1:3945737-3946613 FORWARD LENGTH=877
Length=877
Score = 1092 bits (591), Expect = 0.0
Identities = 716/772 (93%), Gaps = 25/772 (3%)
Strand=Plus/Plus
Query 51 GAAGTTTCAATGGCAAGAGGTCGAAAGCTGACGATGAGCCAGAGCGAGAGGTACCTAGGA 110
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 GAAGCTTCAATGGCAAGAGGTCGAAAGCTGACGATGAGCCAGAGCGAGAGGTACCTAGGA 166
Query 111 AGCAGCTACAGTTACGGTGACAGTAACGGAAACTCCGTCACCGACGAATCAGAGCTCACG 170
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 167 AGCAGCTATAGTTACGGTGACAGTAACGGAAACTCCGCCACCGACGAATCAGAGCTCACG 226
Query 171 GAGGAGGACATCTGGTCACATGCCGTCGATCACAGCCCTGAGATTCTGGAATCTCACGGC 230
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 227 GAGGAGGACATCTGGTCACACGCCGTCGATCACAGCCCGGAGATGCTGGAATCTCATGGA 286
Query 231 GCGTGGAACACACGCGATGCTGTGGTGAGGAATGGGCGCGTGGGTGGTGGTTTGTCGCTG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GCGTGGAACACACGCGATGCTGTGGTGAGGAATGGGCGCGTGGGTGGTGGTTTGTCGCTG 346
Query 291 GCGTTTGAGGACGCGTCATCTTCGCCGAGGATCGTGCACCAGATACGTGGCggaggagaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GCGTTTGAGGACGCGTCATCTTCGCCGAGGATCGTGCACCAGATACGTGGCGGAGGAGAA 406
Query 351 ggaggaggcggtggagggggaggaggaagagttgagaggCAGTTGGCATCGTCGGCGCCG 410
|||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 407 GGAGGAGGAGGTGGTGGAGGAGGAGGAAGAGTTGAGAGGCAGTTGGCGTCGTCGGCTCCG 466
Query 411 GTGAACGTGCCGGATTGGAGTAAGATATACAGAGTCAACTCGGTTGAGTCGATACACGAG 470
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 467 GTGAACGTGCCGGATTGGAGTAAGATATACCGAGTCAACTCGGTTGAGTCGATACACGAG 526
Query 471 TCGGAGGAAGAGGAGGAGGAGGATTCCAGGATGATGATGCCACCGCATGAGTACCTAGCG 530
|| || |||||||||||||| |||||| ||||||||||||| |||||||||||| | |||
Sbjct 527 TCTGATGAAGAGGAGGAGGAAGATTCCGGGATGATGATGCCGCCGCATGAGTACTTGGCG 586
Query 531 CAGAGCCAAAAGCGGCGGAGCAGAAAATCTGGTGGCGGTGGCTCGGTGTTCGAAGGAGTT 590
|||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 587 AAGAGCCAACAGCGACGGAGCAGAAAATCTGGCGGCGGTGGCTCGGTGTTTGAAGGAGTT 646
Query 591 GGAAGAACTCTCAAAGGACGAGAATTAAGGCGCGTTCGAGACGCGATTTGGAGCCAAACA 650
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GGAAGAACTCTTAAAGGACGAGAATTAAGGCGCGTTCGAGACGCGATTTGGAGCCAAACA 706
Query 651 GGGTTCTACGGCTAAGTTAGTATTATATAATTTGaaa-aaaaaaaaaa-a--------C- 699
|||||||||||||||||||||| |||| ||||||||| |||||||||| | |
Sbjct 707 GGGTTCTACGGCTAAGTTAGTAATATAAAATTTGAAAGAAAAAAAAAACAATATAAAACT 766
Query 700 -C----T------TT-GAAAAATAGTTTGCTTATTTTGTCAGTTTAGAGTTAATTTTGCA 747
| | || | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 767 TCAACATAAAAACTTTGGAAAATATTTTGCTTATTTTGTCAGTTTAGAGTTAATTTTGCA 826
Query 748 ACTTTCTTGAATCCCAAGCTTGAGATGTATAAGATTTATA-ATTGGCTTCCC 798
|||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 827 ACTTTCTTGAATCCCAAGCTTGAGATGTATAAGATTTATATATTG-CTTCCC 877
Score = 67.6 bits (36), Expect = 2e-10
Identities = 46/50 (92%), Gaps = 3/50 (6%)
Strand=Plus/Plus
Query 1 ATAGCGAAATCTCTAATTACTTAATCTCTGAATGTTGTTTAAGATAATAA 50
|||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1 ATAGCGAAATCTCTAATTACTTAATCTCTGAATGCT-T--AAGATAATAA 47
> AT1G61930.1 | Symbols: | Protein of unknown function, DUF584
| chr1:22893101-22893976 FORWARD LENGTH=876
Length=876
Score = 342 bits (185), Expect = 3e-93
Identities = 500/642 (78%), Gaps = 62/642 (10%)
Strand=Plus/Plus
Query 60 ATGGCAAGAGGTCGAAAGCTGACG---ATGAGCCAGAGCGAGAGGTACCTAGGAAGCAGC 116
||||||| ||||||||||| |||| |||| || |||||| | ||||| || | |||
Sbjct 118 ATGGCAAAAGGTCGAAAGCCGACGACAATGAACCGGAGCGATCGATACCTTGG-A--AGC 174
Query 117 TACAGTTACGGTGACAGTAACGGAAACTCCGTCACCGACGAATCAGAGCTCACG-GAGGA 175
|||| ||||||||||||| ||||||||||||| |||||||||| ||||||| | |||||
Sbjct 175 TACACTTACGGTGACAGTCACGGAAACTCCGTTACCGACGAATTAGAGCTC-GGTGAGGA 233
Query 176 GGACATCTGGTCACATGCCGTCGA-TCAC-A-G---CC-CTGAGATTCTGGAAT-CTCAC 227
||||||||||||| |||||| | |||| | | || | |||| | ||||| || ||
Sbjct 234 AGACATCTGGTCACCGGCCGTC-ATTCACGACGACACCACCGAGAATGAGGAATCCT-AC 291
Query 228 GGCGCGTGGAACACACGCGAT-GCTGTGGTG-AGGAATGGGCGCGTGGGTGGTGGTTTGT 285
||| |||||||| ||||| | || ||| | | || |||||||| | || || ||||
Sbjct 292 GGCACGTGGAACTTACGCGCTACCT-TGG-GAAAAAACGGGCGCGT--G-GGAGGATTGT 346
Query 286 CGCTGGCGTTT-GAGGACGC-GT-CAT-CTTCGCCGAGGATCGTGCACC-A-GATACGTG 339
||||||| ||| |||| | | | | || ||||| | || | | || | |||| ||
Sbjct 347 CGCTGGC-TTTCGAGGGCTCTTTGGTTGCTCCGCCGTCG-TC-TTCGCCGATGATA-GT- 401
Query 340 GCggagga--gaaggaggaggcggtggagggggaggaggaagagttgagaggCAGTTGGC 397
|| || || | || ||||| ||| || |||| |||||||| | ||| | |||||
Sbjct 402 GCAGAAGATTCACGGCGGAGGAGGT-GA--GGGA-GAGGAAGA-CCG-GAGAAAATTGGC 455
Query 398 ATCGTCGGCGCCGGTGAACGTGCCGGATTGGAGTAAGATATACAGAGTCAACTCGGTTGA 457
|| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||||||||||
Sbjct 456 GTCTTCGGCGCCGGTAAACGTACCGGACTGGAGTAAGATATACCGAGTTGACTCGGTTGA 515
Query 458 GTCGATACACGAG-T---CG--GAGGAAGAGGAGGAGGAGGATTCCAGGATGATGATGCC 511
||| ||||||||| | || ||||| || ||||| ||||| ||| || |||||||||
Sbjct 516 GTCAATACACGAGTTAGACGACGAGGATGACGAGGATGAGGAATCC-GG--GATGATGCC 572
Query 512 ACCGCATGAGTACCTAGCGCAGAGCCAA-AAGCGGCGGAGCAGAAA-ATCTGGTGGCGGT 569
|||||||||||||| || |||| ||| | |||||||| ||||| ||| || || |||
Sbjct 573 GCCGCATGAGTACCTTGCTAAGAGTCAAGCA-CGGCGGAGTAGAAAGATC-GGAGGTGGT 630
Query 570 -G-GC-TCGGTGTTCGAAGGAGTTGGAAGAACTCTCAAAGGAC-GAGAATTAAGGCGCGT 625
| || |||||||| || || || ||||| ||||||||||| | ||||| ||||||||||
Sbjct 631 GGTGCGTCGGTGTTTGACGGCGTCGGAAGGACTCTCAAAGG-CAGAGAACTAAGGCGCGT 689
Query 626 TCGAGACGCGATTTGGAGCCAAACAGGGTTCTACGGCTAAGT 667
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 690 TCGTGACGCGATTTGGAGCCAAACAGGGTTCTACGGCTAAGT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5