BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471314
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit... 1447 0.0
AT1G11755.1 | Symbols: LEW1 | Undecaprenyl pyrophosphate synthe... 228 1e-58
> AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit
6 | chr1:3967483-3969877 FORWARD LENGTH=1338
Length=1338
Score = 1447 bits (783), Expect = 0.0
Identities = 879/925 (95%), Gaps = 8/925 (1%)
Strand=Plus/Plus
Query 288 ATTTGGAGTGATAGAGGCGAAAAAAGGAAACCCGCCAGTAATGCCTTCAGTGATGACCCC 347
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 393 ATTTGGAGTGATAGAGGCGAAAAAGGGAAACCCCCCAGTAATGCCTTCAGTGATGACCCC 452
Query 348 TGGAGGACCTTTAGACCTCTCTTCTGTGTTATTCCGTAACCGCATAATCTTCATCGGGCA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TGGAGGACCTTTAGACCTCTCTTCTGTGTTATTCCGTAACCGCATAATCTTCATCGGGCA 512
Query 408 ACCAATTAACGCTCAAGTTGCTCAGCGAGTCATATCTCAGCTTGTAACCCTTGCATCTAT 467
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 ACCAATTAACGCACAGGTTGCTCAGCGAGTCATATCTCAGCTTGTAACCCTTGCATCTAT 572
Query 468 TGATGATAAATCCGACATCCTGATGTACTTGAATTGTCCCGGTGGCAGCACCTACTCTGT 527
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 573 TGATGATAAATCCGACATCCTGATGTACTTGAATTGTCCCGGTGGCAGTACTTACTCCGT 632
Query 528 CTTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAAGTTGGAACAGTGGCATTTGG 587
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 633 CCTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAAGTTGGAACAGTGGCGTTTGG 692
Query 588 AGTAGCTGCAAGCCAAGGAGCTCTTCTTCTTGCTGGAGGTGAAAAAGGAATGCGCTATGC 647
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 693 AGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGAGGTGAAAAAGGAATGCGCTATGC 752
Query 648 AATGCCTAATACTCGTGTCATGATACATCAACCACAAACTGGATGCGGAGGACATGTGGA 707
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 753 AATGCCAAATACTCGTGTCATGATACATCAACCACAAACTGGATGCGGAGGACATGTAGA 812
Query 708 GGACGTGAGGAGACAGGTGAATGAAGCCATCGAAGCCCGACAAAAAATTGACAGGATGTA 767
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GGACGTGAGGAGACAGGTCAATGAAGCCATCGAAGCCCGACAAAAAATTGACAGGATGTA 872
Query 768 TGCTGCTTTCACTGGACAACCTCTCGAGAAAGTGCAGCAATACACTGAAAGAGATCGTTT 827
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 873 TGCAGCTTTCACTGGACAACCTCTGGAGAAAGTGCAGCAATACACTGAAAGAGATCGTTT 932
Query 828 CTTATCCGCATCTGAGGCGCTTGAGTTCGGGCTCATTGATGGTCTATTGGAAACAGAATA 887
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 CTTATCAGCATCTGAGGCGCTTGAGTTCGGGCTCATTGATGGTCTATTGGAAACAGAATA 992
Query 888 CTAAAACAGCTTACAGGACAATGCACAGAGA-CAGCTCATTGCAATGTTCAAAGCTTCCA 946
|| || |||| |||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 993 CTGAAGCAGCATACAGGACAATGCACA-ACAACAGCTCATTGCAATGTTCAAAGCTTCCA 1051
Query 947 ATTTCATTTGAATATGAACAATTGTAACTGATATTTGTGCATAAATCAGTTTGGTTTTCT 1006
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1052 TTTTCATTTGAATATGAACGGTTGTAACTGATATTTGTGCATAAATCAGTTTGGTTTTCT 1111
Query 1007 TGGCTTTACAATCTACTAAACAGAAATGAGAAAACTAAACTGGTTCTTTTTT-ACCGAAA 1065
||| |||| |||||||||||||| |||||||||||||||| || |||||| || ||||
Sbjct 1112 TGGTTTTATTGTCTACTAAACAGAA-TGAGAAAACTAAACTGTTTATTTTTTTACTGAAA 1170
Query 1066 AATCTGAAAGTTTTATGTTCTATTTTTGTTTACACACGATAACCAAGCAGACCGGAACTT 1125
|||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1171 AATCTGAAAGTTGT--GTTCTATTTTTGTTTACACACGATAACCAAGCAAACCGGAACTT 1228
Query 1126 TATGGAAAA-CCAGATTGGTTAGGTCCAGCTTGTTACTTACTAAATCCTATACAATGGCA 1184
||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1229 TATGGAAAAACCGGATTGGTTAGGTCCAGCTTGTTACT-ACTTAATCCTATACAATGCCA 1287
Query 1185 AGGCGTAAGTTGCTTTGGTACATAG 1209
| || || |||||||||||||||||
Sbjct 1288 ATGCATATGTTGCTTTGGTACATAG 1312
Score = 470 bits (254), Expect = 2e-131
Identities = 276/287 (96%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 1 TAACCTTCAGCCTTGCCGTCCTCTGTCATCTATCCACGCCTGAACCCGAAAAACTCAGAA 60
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 52 TAACCTTGAGTCTTGCCGTCCTCTGTCATCTATCCACGCCTGAACCCGAAAAACTCTGAA 111
Query 61 AATTGAGCTCTGGTAATGGCGGGTTTGGCAATTTCACCTCCTCTCGGTCTTTCCTTCTCT 120
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 112 AGCTGAGCTCTGGTAATGGCGGGTTTAGCAATTTCACCTCCTCTCGGTCTTTCCTTCTCT 171
Query 121 TCTCGAACTCGAAACCCTAAACCCACTTGGTATCTATCTCACAATCAAAGGAATCCTATA 180
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 172 TCTCGAACTCGAAACCCTAAACCCACTTCCTTTCTATCTCACAATCAAAGGAATCCTATA 231
Query 181 AGACGTATAGTTTCTGCTCTACCGAGTCCATATGGAGATTCTCTGAAAGCTGGACTTTCT 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 232 AGACGTATAGTTTCTGCTCTACAGAGTCCATATGGAGATTCTCTGAAAGCTGGACTTTCT 291
Query 241 AGTAATGTTTCTGGATCCCCAATAAAGATTGACAACAAGGATCCAAG 287
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 292 AGTAATGTTTCTGGATCCCCAATAAAGATTGACAACAAGGCTCCAAG 338
> AT1G11755.1 | Symbols: LEW1 | Undecaprenyl pyrophosphate synthetase
family protein | chr1:3969681-3971840 REVERSE LENGTH=1331
Length=1331
Score = 228 bits (123), Expect = 1e-58
Identities = 158/174 (91%), Gaps = 5/174 (3%)
Strand=Plus/Minus
Query 1038 AAACTAAACTGGTT-CTTTTTTACCGAAAAATCTGAAAGTTTTATGTTCTATTTTTGTTT 1096
||||||||||| || |||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1331 AAACTAAACTGTTTATTTTTTTACTGAAAAATCTGAAAG--TTGTGTTCTATTTTTGTTT 1274
Query 1097 ACACACGATAACCAAGCAGACCGGAACTTTATGGAAAA-CCAGATTGGTTAGGTCCAGCT 1155
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 1273 ACACACGATAACCAAGCAAACCGGAACTTTATGGAAAAACCGGATTGGTTAGGTCCAGCT 1214
Query 1156 TGTTACTTACTAAATCCTATACAATGGCAAGGCGTAAGTTGCTTTGGTACATAG 1209
||||||| ||| |||||||||||||| ||| || || |||||||||||||||||
Sbjct 1213 TGTTACT-ACTTAATCCTATACAATGCCAATGCATATGTTGCTTTGGTACATAG 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5