BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471317
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11765.1 | Symbols: | Plant self-incompatibility protein S1... 813 0.0
> AT1G11765.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:3973875-3974509 FORWARD LENGTH=635
Length=635
Score = 813 bits (440), Expect = 0.0
Identities = 546/593 (92%), Gaps = 24/593 (4%)
Strand=Plus/Plus
Query 1 GACAAAACCTCTAAACATCTAGAAAG-AAAAATGAAAAACATTTCAATCTTTCTAGTTGT 59
|||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 3 GACAAAACCTCTAAGCATCTAGAAAGAAAAAATGAAAAATACTTCAATCTTTCTAGTTGT 62
Query 60 TTTTGCCCTATGCATGATTGGCAATGCATATGG-CATTTCCAATCCATTTAAAGGAAAAA 118
|||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||
Sbjct 63 CTTTGCCCTATGCATGATTAGCAATGCATATGGCCA-TTCGAATCCATTTAAAGGAAAAA 121
Query 119 AGACGTCGTTGTTATTCAGGAACAGCCTTTCACACAACAAATGGCTCAAGGTACGTTGTA 178
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 122 AGACGTCGTTGTTATTCAGGAACAGTCTTTCTCACAACAAATGGCTCAAGGTACGTTGTA 181
Query 179 AATCTGGGGACAACGATGTTCGTGAAAGATATATGAGACCTGGAGAAGATTGGGGTTTTA 238
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 182 AATCTGGGGACAATGATGTTCGTGAAAGATATATGAAACCTGGAGAAGATTGGGGTTTTA 241
Query 239 GTTTCCACGATGACGTTATGGGAGAAACACTTTTCTGGTGTACAATGTATAAAGGAGCTG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GTTTCCACGATGACGTTATGGGAGAAACACTTTTCTGGTGTACAATGTATAAAGGAGCTG 301
Query 299 ATTATAAGATA-AAGAAGACGTTTGATGCTTATGTTCAAGACAAGAGAATGCCTCACGGT 357
|||| ||| || || |||| |||||| || |||||||||||||||||||||||||| |||
Sbjct 302 ATTACAAGGTACAA-AAGAAGTTTGACGCATATGTTCAAGACAAGAGAATGCCTCATGGT 360
Query 358 GGCTCGTATAATTATGTCGCTCAAGAAGATGGGATCTATCACAGTACTTTGATACACCGT 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCTCGTATAATTATGTTGCTCAAGAAGATGGGATCTATCACAGTACTTTGATACACCGT 420
Query 418 ATGCGGAAGATGTATGATTGGAATTAG--A------A-AAAA-TCTCCTATGTT-ATTCA 466
||||||||||||||||||||||||||| | | |||| ||||||||||| || ||
Sbjct 421 ATGCGGAAGATGTATGATTGGAATTAGGGATGTTGGATAAAACTCTCCTATGTTTATCCA 480
Query 467 ATATTTATAA--TGCTTACTCAAAT-TATTGATTTGATATAGTTGTAAAGTATTTTTATT 523
|||||||||| |||||| |||||| | |||||||||||||||||||||||||| |||||
Sbjct 481 ATATTTATAAAATGCTTATTCAAATCT-TTGATTTGATATAGTTGTAAAGTATTATTATT 539
Query 524 A-T-TT-GTTT-CATGGAAGAATCACTCTTTACATTAAAAGAAAAGTGGAAGG 572
| | || |||| |||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 540 ACTCTTTGTTTTCATGTAAGAATCACTCTTTACATTCAAAGAAAAGTGTAAGG 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5