BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471329

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11850.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   616    8e-176


> AT1G11850.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant 
structures; EXPRESSED DURING: 12 growth stages; Has 84259 Blast 
hits to 16502 proteins in 1194 species: Archae - 107; Bacteria 
- 41190; Metazoa - 21798; Fungi - 3523; Plants - 7569; 
Viruses - 886; Other Eukaryotes - 9186 (source: NCBI BLink). 
| chr1:3999202-3999876 FORWARD LENGTH=675
Length=675

 Score =  616 bits (333),  Expect = 8e-176
 Identities = 418/455 (92%), Gaps = 21/455 (5%)
 Strand=Plus/Plus

Query  4    CTTTTCTCCGGAGATA--C-ATTCAAGGATGATAAATCTTTCCTCGGAGGCGGCGGCAGC  60
            ||| |||||| |||||  | |||||||||||| |||||||||||||||||||| ||||||
Sbjct  111  CTTATCTCCGAAGATACCCAATTCAAGGATGAAAAATCTTTCCTCGGAGGCGGTGGCAGC  170

Query  61   GGTGGTGGCCTAGGGCTTGGCCTTGGTGGAGGAGCTGGTCTTGGTGGGCTTGGGATTGGG  120
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  171  GGTGATGGCTTAGGGCTTGGCCTTGGTGGAGGAGCTGGTCTTGGTGGGCTTGGGATTGGG  230

Query  121  GCTGGGATCGGCGCGGGAGCCGGACTAGGGTTAGGTGGAGGCGGTGGTGGACTTGGAGGT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  231  GCTGGGATCGGCGCGGGAGCCGGACTAGGGTTAGGTGGAGGCGGTGGTGGACTCGGAGGT  290

Query  181  GGTGGCGGTGGACTCCTCGGTGGAGGCGGCTTTGGCGGAGGAGCCGGTGGCGGACTCGGT  240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  291  GGTGGCGGTGGACTCCTCGGTGGAGGCGGCTTTGGGGGAGGAGCCGGTGGCGGACTCGGT  350

Query  241  GGCCTTCCTTGAACGTATTGTCAAGTGTGCGTG--AGAGCTGACTCTCAGCTTATTAC-A  297
            |||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||| |
Sbjct  351  GGCCTTCCTTGAACGTATTGACAAGTGTGCGTGTGAGAGCTGATTCTCAGCTTATTACTA  410

Query  298  CA--AATTAAGTTACTTTCATTGTCTTAATAAAATATAGAGGGTATGAATTT-GGATTTC  354
             |  |||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||
Sbjct  411  -ATTAATTAAGTTACTTTCATTCTCTTAATAAAATCTAGAGGGTTTGAATTTCGGATTTC  469

Query  355  ---AGCTTTGATTTAAACTTCAATATTAGAACCATAAAAGGTCTTAGCTACGCCGTTCAG  411
               |||||| ||||||||||||||||| |||||| |||||||||| |||||    |  ||
Sbjct  470  TTCAGCTTTAATTTAAACTTCAATATTTGAACCA-AAAAGGTCTT-GCTAC----T--AG  521

Query  412  ATGTAATGCTCGTAATCGTATTATGTGTAACGCCG  446
            | |||||||||||||||||||||||||||||||||
Sbjct  522  AGGTAATGCTCGTAATCGTATTATGTGTAACGCCG  556



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21212990078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5