BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471334
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr... 2396 0.0
> AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1:4003846-4006739
FORWARD LENGTH=1777
Length=1777
Score = 2396 bits (1297), Expect = 0.0
Identities = 1595/1734 (92%), Gaps = 39/1734 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTTACACAAATTGAGACT--C-GCTGCAGTTCCTATAGCCTTCTCTTCTCGTCTC 57
||| ||||||||||||||||||| | || || |||||| || ||||||| ||||| | |
Sbjct 50 ATGGGTTTACACAAATTGAGACTCGCAGCGGCGGTTCCTGTAACCTTCTCCTCTCG-C-C 107
Query 58 TTCTTCCTCAAGCCATTTCCCAATACTCTAACCCTAGGTTTGTTTTCCCGCCATCTTCAA 117
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 108 -TCTTCCTCAAGCCATTTACCAATACTCTTACCCTAGGTTTGTTTTCCCGCCATCTTCAA 166
Query 118 CCCC---ATAAGCCTCTCCTAGTCAGAGCTTTCTCCGCTTCCGCCGCCGTACAAGATATT 174
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 167 CCCCGTAATAAGCCTCTCCTTGTCAGAGCTTTCTCCGCTTCCGCCGCCGTACAAGATATT 226
Query 175 CCGGCCACGCAGGCCTCAGATTCCTC--T-GC-G--AGGCCTCAGTGGAAAGCAGCGATT 228
|||||||| ||| |||| |||||||| | || | ||||||| |||||| |||||||||
Sbjct 227 CCGGCCACACAGACCTCCGATTCCTCTGTAGCAGCAAGGCCTCTGTGGAAGGCAGCGATT 286
Query 229 GATTTCAAATGGATAAGAGATAATAAGGAAGCAGTCAAAATCAACATTAAGAACCGAAAT 288
||||||||||||||||| || ||||||||||||||| |||||||||| | |||| | |||
Sbjct 287 GATTTCAAATGGATAAGGGACAATAAGGAAGCAGTCGAAATCAACATCAGGAACAGGAAT 346
Query 289 TCGAATGCTAATTTGGAAGCAGTGCTTGAGCTTTACGAGAACATGGTCAATCTCCAAAAG 348
|||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 347 TCGAATGCTAATTTGGAAGCTGTGCTCCAGCTTTATGAGAACATGGTCAATCTCCAAAAG 406
Query 349 GAAGTTGAGCA-GCTTCGTGAGGAAAGAAACAACGTTGCCAAGAAGATGAAAGGGAAGCT 407
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 407 GAAGTTGAG-AGGCTTCGTGAGGAAAGAAACAACGTTGCCAAAAAGATGAAAGGGAAGCT 465
Query 408 GGAACCATCACAACGTGAGACACTCGTACAAGAAGGTAAAAATCTTAAGGAAAGTCTTGT 467
||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 466 GGAGCCATCAGAACGTGAGAGACTCGTAGAAGAAGGTAAAAATCTTAAGGAAAGTCTTGT 525
Query 468 AACTCTGGAGGAAGACCTTGTGAAGCTTAAAGATGAGCTGCAACATGTAGCACAGTCTAT 527
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 526 TACTCTGGAAGAAGACCTCGTGAAGCTTAAAGATGAGCTCCAACATGTAGCACAGTCTAT 585
Query 528 ACCAAATATGACTCACCCTGATGTTCCTATTGGAGGAGAGGATTCATCGGCAGTTAGAAA 587
||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 586 ACCGAATATGACTCACCCTGATGTTCCTGTTGGAGGAGAGGATTCATCGGCAATTAGACA 645
Query 588 GGAGGTTGGTAGTCCACGTGAGTTTAGTTTTCCAATCAAGGATCATCTTCAGCTTGGGAA 647
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 646 GGAGGTTGGTAGTCCACGTGAGTTTAGTTTTCCAATAAAGGATCATCTTCAGCTTGGGAA 705
Query 648 GGATCTTGATCTCATTGATTTTGACTCTGCTGCAGAGGTAAGTGGTTCAAAATTCTTCTA 707
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 706 GGATCTTGATCTCATTGATTTTGACTCTGCTGCTGAGGTAAGTGGTTCAAAGTTTTTCTA 765
Query 708 TTTGAAAAATGAGGCAGTTTTATTGGAGATGGCGCTCCTTAATTGGACACTATCACAAGT 767
| |||| |||||||||||| ||||||||||||| || |||||||||||| ||||||||||
Sbjct 766 TCTGAAGAATGAGGCAGTTCTATTGGAGATGGCTCTTCTTAATTGGACATTATCACAAGT 825
Query 768 CATGAAGAAGGGTTTTACACCCCTAACGACCCCTGAAATCGTGAGATCTTCTATTGTTGA 827
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 826 CATGAAGAAGGGTTATACCCCCCTAACGACTCCTGAAATCGTGAGATCTTCTATTGTTGA 885
Query 828 GAAATGCGGTTTCCAACCTCGTGGAGATAATACTCAGGTTTATTCTATAGATGGAACTGA 887
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 886 GAAATGCGGTTTCCAACCTCGTGGGGATAATACTCAGGTCTATTCGATAGATGGAACTGA 945
Query 888 CCAATGTCTCATTGGTACTGCTGAAATTCCAGTAGGAGGAATCCACATGGACTCTATTCT 947
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 946 CCAATGTCTCATTGGTACCGCTGAAATTCCCGTAGGAGGAATACACATGGATTCTATTCT 1005
Query 948 TCTTGAGTCGGCATTACCTTTGAAATATATAGCGTTCTCTCATTGCTTCCGTACTGAAGC 1007
|||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1006 TCTTGAATCAGCATTGCCTTTGAAATATATAGCATTCTCTCATTGCTTCCGTACTGAAGC 1065
Query 1008 GGGTGCAGCTGGCGCTGCCACAAAAGGTCTTTACCGAGTTCATCAGTTCAGCAAAGCAGA 1067
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGGTGCTGCTGGCGCTGCCACAAAAGGTCTTTACCGAGTTCATCAGTTCAGCAAAGCAGA 1125
Query 1068 AATGTTTGTCATATGCCGACCTGAAGATAGTGAATCCTTCCACCAAGAACTCATTCAGAT 1127
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GATGTTCGTCATATGCCAACCTGAAGATAGTGAATCCTTCCACCAAGAACTCATTCAGAT 1185
Query 1128 TGAAGAAGATTTGTTCACTTCCCTAGGATTACACTTCAAAACATTGGATATGGCCACAGC 1187
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1186 CGAAGAAGATTTATTCACTTCTCTAGGATTACACTTTAAAACATTGGATATGGCCACAGC 1245
Query 1188 GGATTTAGGCGCTCCAGCTTACCGCAAGTTTGACGTTGAAGCATGGATGCCCGGTTTAGG 1247
||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1246 CGATTTAGGCGCTCCAGCATATCGCAAGTTTGACATTGAAGCATGGATGCCCGGTTTAGG 1305
Query 1248 ACGATTTGGCGAGATATCAAGCGCATCAAACTGCACGGATTACCAAAGTCGGAGACTGGG 1307
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1306 ACGATTTGGCGAGATATCAAGCGCATCAAACTGCACAGATTACCAAAGTCGAAGACTGGG 1365
Query 1308 AATCCGTTACCGCCCATCTGAACCACCTCAGACGGGTCCTAAGAAAGGTAAAGCGAATCT 1367
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1366 AATCCGTTACCGCCCATCTGAACCGCCTCAGACGGGTCCTAAGAAAGGGAAAGCGAATCT 1425
Query 1368 TCCAGCTACTAAGTTCGTCCACACTCTAAACGCAACGGCATGTGC-GATCCCGAGGATGA 1426
|||||| |||||||| ||||||||||||||||| || || ||||| | |||| |||||||
Sbjct 1426 TCCAGCCACTAAGTTTGTCCACACTCTAAACGCGACTGCGTGTGCCG-TCCCAAGGATGA 1484
Query 1427 TGGTGTGTTTACTGGAGAATTACCAGCAAGAAGATGGATCTGTGGTGATCCCTGAGCCCC 1486
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TGGTGTGTTTGCTGGAGAATTACCAGCAAGAAGATGGATCTGTGGTGATCCCTGAGCCCC 1544
Query 1487 TTAGGCCTTTCATGGGAGGCATTGAACTCATCAAACCCAAGCTCAAGTAGtttttttATA 1546
| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1545 TGAGGCCTTTCATGGGAGGCATTGAACTCATCAAACCCAAGCACAAGTAGTTTTTA-ATG 1603
Query 1547 GTTAGATCTTTGCAATTCTTGCTGTTATTCCTCTTGTACTTGAAATTT-GTTCATTATAC 1605
||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 1604 GTTAGCTCTTTGCAATTCTTGCTGTGATTCCTCTTGTACTTGAGGTTTTGTTCATTATAC 1663
Query 1606 TTT-----G----T---T-----GTGTTCTTTTCTCAAAACATACAATTTATAGTTTATA 1648
||| | | | |||||||| ||||| ||||||| ||||||||||||||
Sbjct 1664 TTTTCACAGGCGCTGAGTTTTTTGTGTTCTTGTCTCAGAACATACCATTTATAGTTTATA 1723
Query 1649 TCATCATAACCGAATGTTCTTTGATTCGATAATAATGGAAGGGAAATATACATT 1702
||||||||||||| ||||||||||||| ||||||| | ||||||| ||||||||
Sbjct 1724 TCATCATAACCGA-TGTTCTTTGATTCAATAATAACGAAAGGGAAGTATACATT 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84136113420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5