BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471336
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11880.1 | Symbols: | transferases, transferring hexosyl gr... 2235 0.0
> AT1G11880.1 | Symbols: | transferases, transferring hexosyl
groups | chr1:4007705-4010433 REVERSE LENGTH=1780
Length=1780
Score = 2235 bits (1210), Expect = 0.0
Identities = 1453/1569 (93%), Gaps = 21/1569 (1%)
Strand=Plus/Plus
Query 2 AAAATCACAAATCGTCACCGGATTCTTGCAATCGAGAATCATCTGCCGACTTTTTATTCT 61
|||||||||||||||||||||| ||||||||||||||| |||||| || |||||||| ||
Sbjct 27 AAAATCACAAATCGTCACCGGACTCTTGCAATCGAGAACCATCTGTCGCCTTTTTATACT 86
Query 62 CGAATACGAGCTCGTGATCAATGGCCATTTCTATGGAATCAAGCTCGAAATCAAGGAAAG 121
||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||
Sbjct 87 CGAATACGAGCTCGTGATCAATGGCGAAAGCTTTGGAATCAAACTCGAAATCAAGGAAAG 146
Query 122 AAACCGTCTTGATAAAATACGCCATCTTCTCGCGACTTCTCGTTCTGTTCTTAACCATTT 181
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 147 AAACCATCTTGATCAAATACGCCATCTTCTCGCGACTTCTCGTTCTCTTCTTAACCATTT 206
Query 182 TGTGGCGGAGCTTACTCCAACCGTACGATACATCCGCTGCACTAAATCCTCCTTGCTTGT 241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 207 TGTGGCGGAGCTTACTCCAACCGTACGATACATCCGCTGCACTGAATCCTCCTTGCTTGT 266
Query 242 ATCACAAAGAAGATTCTCCTCCATTTCTAGTAGCCAATGCAACTTCGAGATCCCTTGAAA 301
||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |
Sbjct 267 ATCACAAAGAAGATTCTTTTCCGTTTCTAGTAGCCAATGCAGCTTCGAGATCCCTTGAGA 326
Query 302 ACAGCGTTGTTTGGGACAGTGTGTATTTTCTCCGAATCACCGAGTGTGGCTATGAGTATG 361
|||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 327 ACAGTGTTGTCTGGGACAGTGTTTATTTTCTCCGAATCACAGAGTGTGGCTATGAGTATG 386
Query 362 AGCAGACTTATGCCTTCTTGCCTCTGCTTCCCTTCTTCATCTCGCTTTTCTCTCGCACAG 421
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 387 AGCAGACTTACGCCTTCTTGCCTCTGCTTCCTTTCTTCATCTCGCTTCTCTCTCGCACAG 446
Query 422 TTTTTGCGCCTTTGGTTCCATTGATTGGTCTTCGAGCTGTGATGGTGTTGTCTGGTTACA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 447 TTTTTGCGCCTTTGGTTCCATTGATTGGTCTTCGAGCTGTGATGGTGTTGTCTGGTTTCA 506
Query 482 TTGTCAGCAACTTAGCCTTCATATTAGCTGCTATCTATCTATTCAGGCTTTCAGTTATTA 541
||| || ||||| || |||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 507 CTGTTAGTAACTTGGCGTTCATATTTGCTGCTATCTATCTATTTAGGGTTTCAGTTATTA 566
Query 542 TCTTGAAGGACT-CTGAAGCATCATTCAGAGCTTCGATTGTGTTCTGTTTCAATCCGGCG 600
|||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 567 TCTTGAAGGA-TACTGAAGCATCATTCAGAGCTTCGATTATCTTCTGTTTCAATCCGGCG 625
Query 601 TCCATATTCTATTCGTCAATATATTCAGAGAGTCTATATGCTCTTTTTTCAATTGGAGGC 660
|||||||| |||||||||||||||||||| ||| | ||||||||||| || ||||||||
Sbjct 626 TCCATATTTTATTCGTCAATATATTCAGAAAGTTTGTATGCTCTTTTCTCTATTGGAGGA 685
Query 661 GTGTATCACTTGTTATCTGGTACAAGCAATGTAGCCGTTCTCTGGCTTGCACTCTCTGGT 720
||||||||||||||||||||||| |||||||||| |||||| ||| |||| ||||| ||
Sbjct 686 GTGTATCACTTGTTATCTGGTACCAGCAATGTAGGCGTTCTTTGGTTTGCTCTCTCAGGC 745
Query 721 TGTGCAAGGTCTAATGGAGTTCTTAATGCTGGTTATATCTGTTTCCAGACAATGCATCGA 780
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TGTGCAAGGTCCAATGGAATTCTTAATGCTGGTTATATCTGTTTCCAGACAATGCATCGA 805
Query 781 GCATATGAAGCTTTATATCAGAAAAGGCGCACGTATGTAAGTTATAAGTATTTGGCTATG 840
|||||||||||||||||||||||| |||| | | | | || || | |||||
Sbjct 806 GCATATGAAGCTTTATATCAGAAACGGCGTGC-T-T--A--TT-TA-G-------CTATG 850
Query 841 CAGATTTTGGTTGCTGGATTTCTTAGATGCGTATGCATTTGTCTTCCTTTTGTCGCCTTT 900
||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 851 CAGGTTTTTATTGCTGGATTTCTTAGATGCATATGCATTTGTCTTCCTTTTGTCGCATTT 910
Query 901 CAAGCATACGGATACTATAACCTTTGTCATGGACGTACACTTGATGAAATGAGGCCTTGG 960
||||||||||||||||||||| | || ||||||| ||| | ||||||| |||||||||||
Sbjct 911 CAAGCATACGGATACTATAACATCTGCCATGGACATACGCGTGATGAAGTGAGGCCTTGG 970
Query 961 TGCAAAGGAAGGATACCTTTGCTGTACAACTTCATTCAAAGTCATTATTGGGGAGTAGGT 1020
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 971 TGCAAAGGAAGGATTCCGTTGCTGTATAACTTCATTCAAAGTCATTATTGGGGAGTAGGT 1030
Query 1021 TTCCT-AAGATACTTTCAGTTTAAGCAGCTCCCAAACTTTCTGCTCGCATCCCCAATTCT 1079
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TTCCTTAA-ATACTTTCAGTTTAAGCAGCTCCCAAACTTTCTGCTCGCATCCCCAATTCT 1089
Query 1080 CTCTTTAGCTGTTTGTTCGATTATGAGTTACATGAAGTCTCGGCCTGAGCTCTTCATTTC 1139
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1090 CTCTTTAGCTGTGTGTTCGATTATGAGTTACATGAAGTCTCGGCCTGAGCTCTTCATATC 1149
Query 1140 GCTGGGTTTTCAAGCTACCGAGAAAGAAAAGAGATCTGTTGC-AGGGCTTTATTCTCTGA 1198
|||||| |||||||| |||||||||||||||||||||| ||| || |||||||||||||
Sbjct 1150 GCTGGGGTTTCAAGCCACCGAGAAAGAAAAGAGATCTGCTGCCAGA-CTTTATTCTCTGA 1208
Query 1199 AGGATGCAGTTGAACCAAATGTTAAAACTTCAACAAATGAAGGAAACCGTGACATCAGAC 1258
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |
Sbjct 1209 AGGATGCAGTTGAACCAAGTGTTAAAACTTCAACAAATGAAGGAAACCATGACATTAGGC 1268
Query 1259 AGCGGAAACCCAGCAGTAAGAAGGATGTGACTGTGACCAAAGTGGCTCCAGAAAAATCAG 1318
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1269 AGCGGAAACCTAGCAGTAAGAAGGATGTGACTGGGACCAAAGTGGCTCCAGAAAAATCAG 1328
Query 1319 GATACTTTTCAGCTGATGTTTTCCCATTTATCGTACACTTGGGTTTGATGGCAACCACGG 1378
||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 1329 GATACCTTTCAGCTGATGTTTTCCCATTTATCGTACACTTGAGTTTTATGGTAACCACGG 1388
Query 1379 CATTCTTCATCATGCATGTTCAGGTTGCAACACGGTTCTTGTCAGCAAGCCCTCCACTTT 1438
| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1389 CGTTCTTCATCATGCATGTCCAGGTTGCAACAAGGTTCTTGTCAGCAAGCCCTCCACTTT 1448
Query 1439 ACTGGTTTGCATCGTCTTTGATTGCATCTCCAGAACATAGTAAATGGGGATACTTGATAT 1498
|||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 1449 ACTGGTTTGCATCGTCTTTGATTGGATCTCCAAAACATAGTAAATGGGGGTACTTGATAT 1508
Query 1499 GGTCATATTGTGCAGCCTATATCCTTCTTGGCACTTTGCTCTTCTCAAACTTTTATCCCT 1558
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1509 GGTCATATTGTGCAGCCTATATCCTTCTTGGTACTTTGCTCTTCTCAAACTTTTATCCCT 1568
Query 1559 TCACTTGAT 1567
|||||||||
Sbjct 1569 TCACTTGAT 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77359039845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5