BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471338
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11900.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1694 0.0
> AT1G11900.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4013121-4014681 REVERSE LENGTH=1200
Length=1200
Score = 1694 bits (917), Expect = 0.0
Identities = 1084/1165 (93%), Gaps = 10/1165 (1%)
Strand=Plus/Plus
Query 1 TTACCGAGGAAGATGATGAAGTGGTCGATCGTTAAGAGAATCCCCGTCTATGGAGGTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 TTACCGAGGAAGATGATGAAGTGGTCGATCGTTAAGAGAATCCCCGTCTATGGAGGTTCC 99
Query 61 TTCACTTCTTTGAAACATATGCTGTTAGCTCCAGCTGATTTGAGCTGGAGCTGCTCGTTC 120
|||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 100 TTCATTTCTATGAAACATATGATGTTAGTTCCAGCTGATTTGAGCTGGAGCTGCTCGTTC 159
Query 121 TCTGGTATGCACTCTTTGATAAACACAGGAGAAGAAGATGATGAAGAACTCTTGAAGAAG 180
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 160 TCTGGTATGCACTCTTTGATAAACACTGGAGAAGAAGACGAGGAAGAACTCTTGAAGAAG 219
Query 181 ATAGTTAACCAGAGTGAAAGTGGTTCGAAGATCATCAGCAAAGTCGATTATACGAATCTT 240
|| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 220 ATCGTTAACCATAGTGAAAGTGGTTCAAAGATCATCAGCAAAATCGATTATACGAATCTT 279
Query 241 GTTGAGAAGTATACAAGAGATGGAAATCTATCTGCCGCTA-ATGAGTTGTGGCAGTCCTT 299
|||||||||| |||||||||||||||||| |||| || | |||| |||| ||||| ||
Sbjct 280 GTTGAGAAGTTTACAAGAGATGGAAATCTCTCTGGAGC-ATATGACTTGTTACAGTCTTT 338
Query 300 ACAAGACAAGAACATATGCTTGCCTATTTCGGTTTTCAAGAACCTACTTGCAG-GAGCGG 358
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| | ||||
Sbjct 339 ACAAGAAAAGAACATATGTTTGCCTATTTCGGTTTTCAAGAACCTTCTTGCAGCG-GCGG 397
Query 359 GTGAGAAGAACGATATGAAGCTTTCTTGCAGAATTTTCAGAGAGCTCTTGATCTCGCCGG 418
||||| ||||||||||||||||||||| ||| | ||||||||| ||||||||| |||||
Sbjct 398 GTGAGCTGAACGATATGAAGCTTTCTTGTAGAGTCTTCAGAGAGGTCTTGATCTTGCCGG 457
Query 419 TTAAGGAACCATTGAGTTCAGATTGTTATCTCAACCTTGCTAGAGCATTCATTAATACCA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 458 GTAAGGAACCATTGAGTTCAGATTGTTATCTCAACCTTGCTAGAGCATTCATTAACACGG 517
Query 479 ATGATTGCACGCATTTGACGAGTCTTG-TTAAAGAAATATCGGAGTCTTCACTTCCGTAT 537
||||||||||| |||||||||||| || ||||||| ||||| ||||||||||||||||||
Sbjct 518 ATGATTGCACGTATTTGACGAGTC-TGCTTAAAGAGATATCAGAGTCTTCACTTCCGTAT 576
Query 538 AGGTTAATAGTAATGAACAGAATCATCCTTGCATTTGCTGAAACGAGACAGATTGATAAG 597
||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 577 AGGTTAATAGTAATGAACAGAATCATCTTTGCATTTGCTGAAACTAGACAGATCGATAAG 636
Query 598 GTTCTTATGATACTTAAGCAGATGAAAGAGTGGGAATGTAAACCAGATGTGATCACATAC 657
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GTTCTTATGATACTTAAGGAGATGAAAGAGTGGGAATGTAAACCAGATGTGATCACATAT 696
Query 658 AACTCGGTTTTGGATATCTTGGGACGAGCTGGCCTCGTGAATGAGATGT-TGGGGGTATT 716
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||
Sbjct 697 AACTCGGTTTTGGATATCTTGGGACGAGCTGGCCTTGTGAATGAGAT-TCTGGGGGTTTT 755
Query 717 GTCAACGATTAAGGAAGATTGCGA-TGTATCCGTAAACATCATTACATACAACACGGTGT 775
||||||||| ||||||||||| | |||||| |||||||||||||| |||||||||||||
Sbjct 756 GTCAACGATGAAGGAAGATTG-TAGTGTATCTGTAAACATCATTACTTACAACACGGTGT 814
Query 776 TAAACGGGATGAGGAAAGCTTGTAGATTCGATATGTGTTTGGTGATATACAATGAAATGG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAAACGGGATGAGGAAAGCTTGTAGATTCGATATGTGTTTGGTGATATACAATGAAATGG 874
Query 836 TTCTGCGTGGAATTGAACCGGATTTGCTAAGTTATACAGCAGTGATAGACAGTTTGGGTC 895
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 875 TTCAATGTGGAATTGAACCAGATTTGCTAAGTTATACAGCGGTGATAGACAGTTTGGGTC 934
Query 896 GATCTGGGAACACAAAGGAATCGTTGAGGCTTTTCGACGAGATGAAACAGAGACAGATTC 955
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 935 GATCTGGGAACGTTAAGGAATCGTTGAGGCTTTTCGATGAGATGAAGCAGAGACAGATTC 994
Query 956 GACCATCGGTTTATGTCTACCGTGCTTTAATCGATTGTCTGAAGAAGTCAGGAGATTTTC 1015
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 995 GACCATCGGTTTATGTCTACCGAGCTTTAATCGATTGTCTGAAGAAGTCAGGAGATTTTC 1054
Query 1016 AGGGGGCATTGCAGCTTTCAGATGAGTTGAAGAACACTTCCTCATTAGATTTGGCTGGTC 1075
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 AGAGTGCATTGCAGCTTTCAGATGAGTTGAAGAACACTTCCTCATTAGATTTGGCTGGTC 1114
Query 1076 CACAAGATTTCAAGAGACACTTGAGGTCACATAGACGATAGAATAGCCTGTTTAGACTGT 1135
|||||||||| |||||||| ||||||||||||||||| || |||||||||| || ||| |
Sbjct 1115 CACAAGATTTTAAGAGACATTTGAGGTCACATAGACGCTAAAATAGCCTGTGTAAACTCT 1174
Query 1136 TTAGATTCTGTTAGAAATGTGTATG 1160
| ||||| ||||||| || ||||||
Sbjct 1175 TCAGATTTTGTTAGATATATGTATG 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5