BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471341
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11915.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1679 0.0
> AT1G11915.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1);
Has 261 Blast hits to 261 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:4021825-4023292 FORWARD LENGTH=1203
Length=1203
Score = 1679 bits (909), Expect = 0.0
Identities = 1085/1170 (93%), Gaps = 12/1170 (1%)
Strand=Plus/Plus
Query 1 GAACAATGTCTCCACTTCACTCTTACTTTATCTTCTTCTTCCTTCTTATGGCCATCCTTC 60
|||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||
Sbjct 1 GAACAATGTCTCCACTTCACTCTTACATTATCTTCTTCTCCCTTCTCATGACCATCCTTC 60
Query 61 TTCAATCATCAACAACATCATCCCAATCAAATCTCTGCAGATCTTCTTGCGGCAACATTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCAATCATCAACAACATCATCCCAATCAAATCTCTGCAGATCTTCTTGCGGCAACATTC 120
Query 121 CGATAAATTACCCTTTTTCCATCGACGACGGTTGTGGTAGCCCTTATTACAGACACATGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGATAAATTACCCTTTTTCCATCGACGACGGTTGTGGTAGCCCTTATTACAGACACATGC 180
Query 181 TCATTTGCTCCGACAACAACACCAAGCTCGAACTTAGAACACCATCTGGTAAATACCCTG 240
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATTTGCTCCGACAACGATACCAAGCTCGAACTTAGAACACCATCTGGTAAATACCCTG 240
Query 241 TTAAATCCATAAGCTACTCTGATCCTCACCTTCTTGTCTCCGATCCATTCATGTGGAATT 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TTAAATCTATAAGCTACTCTGATCCTCACCTTCTTGTCTCCGATCCATTCATGTGGAACT 300
Query 301 GTCAAGATCGAGACAATTTTCGACCGACTAGATCATTTAGCATCGATTCAAGCACACACT 360
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 301 GTCAAGATCGAGACAATTTTCGACCCACTAGATCTTTTAGCATCGATTCAAGTACACACT 360
Query 361 TCACTGTCTCCCCTCAAAACGACTACTTGTTCTTCAACTGCAACACCGAGAAAGTAATAG 420
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 361 TCACTGTCTCTCCTCAAAACGACTACTTGTTCTTCAACTGCAACACCGATAAAGTTATCG 420
Query 421 TCGAGCCAAAACCGCTCTTCTGCGAGAGGTTTCCAGATAGATGTGACTCGTCCTGCGATA 480
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TCGAACCAAAACCGCTCTTCTGCGAAAGGTTTCCAGATAGATGTGACTCGTCCTGCGATA 480
Query 481 GTTCAAGCTATTTATGCAGGCATTTGCCCGAATGCGGCTCTGCTTTGGGATCTAGGGTTT 540
|||| |||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 481 GTTCTAGCTATCTATGCAGACATTTGCCTGAATGTGGCTCTGCTTTGGGATCTAGGGTTT 540
Query 541 CTTGTTGTTCGTATTACCCGAAAGCCACTCAGTCTCTTAGGCTCATGCTGCAGAACTGCG 600
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||| |
Sbjct 541 CTTGTTGTTCGTATTACCCTAAAGCGACTCAATCTCTTAGGCTCATGCTGCAGGACTGTG 600
Query 601 CGACATATACAAGCGTGTATTGGAGGAGTACAGGTGTGGAGAATGCACCGTATGATCAGT 660
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGACGTATACAAGTGTGTATTGGAGGAGTACAGGTGTGGAGAATGCACCGTATGATCAGT 660
Query 661 TTCCAGAGTACGGGATTAGGGTTGATTTCGAATTTCCAGTGACTATGAAGTGCCTTCTTT 720
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 661 TTCCAGAGTACGGGATAAGGGTTGATTACGAATTTCCAGTGACAATGAAGTGCCTTCTTT 720
Query 721 GCCAAGAAACGACGAAAGGTAGTGGAGTTTGTGGGTTTAATACAAGGACTCGGGATTTCT 780
||||||||||||| |||||| |||||||||||||||||||||| ||||| || ||||| |
Sbjct 721 GCCAAGAAACGACTAAAGGTGGTGGAGTTTGTGGGTTTAATACGAGGACACGAGATTTTT 780
Query 781 TGTGCCTTTGCAAACAAGGCAACGTCACTACTTATTGCAAAGATCCAAGCCTCGTAAAGC 840
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 781 TGTGCCTTTGTAAACAAGGCAATGTCACTACTTATTGCAAAGATCCAAGCCTCGTAAACC 840
Query 841 ATAAACGCGTTGGAGCTATGGCAGGAACAGTGACGGCAGTTTCAGCGGCCGGAGCGATTG 900
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 ATAAACGCGTAGGAGCTATCGCAGGAACAGTGACGGCAGTTTCAGCGGCAGGAGCGATTG 900
Query 901 GCGTTGCGGGTGGAGTGTATTGGTACTTGAGGAAAGTGAGAGCCAAAGCTCCGGTCACTT 960
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 GCGTTGCCGGTGGAGTATATTGGTACTTGAGGAAAGTGAGAGCCAATGCTCCGGTCACTT 960
Query 961 GTGGAGTGCAAAGCAACGAAAACAGAATTTTCTAAAAGCTCCAATGAAATCATAACTTTA 1020
||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 GTGGAGTTCAAAGCAATGAGAACAGAATTTTCTAAAAGCTCCAATGAAATCATAATTTTA 1020
Query 1021 AGAAGAC-AAAAGCATGGTCGGTCCCACACTCA-CAATTCCttttttttttt-t-t-ttt 1075
| |||| |||||||||||| | ||||||| | ||| || |||||| | | |||
Sbjct 1021 AAAAGATTAAAAGCATGGTCACACTCACACTCTTCTTTTC-TTCTTTTTTCGCTCTCTTT 1079
Query 1076 tgtctttttttttttaattttccttttATCTTTGATCTTGTGTAGACTACAAAGTTGG-G 1134
|| ||||||| || | || ||||||||||||||| ||||||| ||||||| ||| |
Sbjct 1080 TGCCTTTTTTGTTCT--TTA-CCTTTTATCTTTGATTTTGTGTATACTACAA-GTTCTAG 1135
Query 1135 ATAAAGATTTTTGTATAATTTTTCGT-TTT 1163
||||||||||| ||||||||||| || |||
Sbjct 1136 ATAAAGATTTTCGTATAATTTTTTGTGTTT 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5