BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471343
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11925.1 | Symbols: | Stigma-specific Stig1 family protein ... 987 0.0
> AT1G11925.1 | Symbols: | Stigma-specific Stig1 family protein
| chr1:4025930-4026732 REVERSE LENGTH=803
Length=803
Score = 987 bits (534), Expect = 0.0
Identities = 721/805 (90%), Gaps = 37/805 (5%)
Strand=Plus/Plus
Query 1 CATCTAAAAATATTCATACACATACAAAACAAACGCAAATACAT-CC----C------AA 49
|||||||||| |||||||||||||| ||||| ||| |||||||| || | ||
Sbjct 1 CATCTAAAAACATTCATACACATAC-AAACACACGAAAATACATCCCAATTCTAAAAAAA 59
Query 50 ---TTTTTTCAGTTTCTCTCCTTTGATTTCTTAAAAGAAGAT---------C----ATGA 93
|||||||| ||| |||||||||||||||||||||||||| | ||||
Sbjct 60 TTGTTTTTTCAATTTTTCTCCTTTGATTTCTTAAAAGAAGATCCACAACAACAAGAATGA 119
Query 94 ATACATTCAAGATATCCTATTTCATTATGGTGCTCATAATGGTCTTAGCCATTGCTATAA 153
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATACATTCAAGATATCATATTTCATTATGGTGCTCATAATGGTCTTAGCCATTGCTATAA 179
Query 154 CATTTAGCGAATCGCCAACGGTTGAGGCGAAACATCAACACAAATATGGTAGGGGGATAG 213
|||||||||| ||| ||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 180 CATTTAGCGAGCCGCTAACGGTTGAAGCAAAACATCAACACAAATATGGTTGGGGGATAG 239
Query 214 CCGCTTCTGCAAGGAACAAAGGTAGGAAACCTATAGGTGCAACAATGACATGTGACAAAA 273
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 240 CCGCTTCTGCAAGGAACAAAGGTAGGAAACATTTAGGTGCAACATTGACATGTGACAAAA 299
Query 274 GCTCCAAAGTATGTCGTCTCAAAGGCAGTCCAGGTCGTAATTGTTGTCGTAAGAGGTGTG 333
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 GCTCCAAGGTATGTCGTCTCAAAGGCAGTCCAGGTCGTAATTGTTGTCGTAAGAAGTGTG 359
Query 334 TCGATTTGAGGACCAACAAATTGAATTGCGGAAGATGTGGAAAAAGCTGTCAATACTCGG 393
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 360 TCGATTTGAGGACCAACAAATTGAACTGCGGAAGATGTGGAAAAAGCTGCCAATACTCGG 419
Query 394 AGATTTGTTGCAACGGATATTGTGTAAACCCAATGTTTGATAGGAGACATTGTGGAGGTT 453
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGTTTGCTGCAACGGATATTGTGTAAACCCAATGTTTGATAGGAGACATTGTGGAGGTT 479
Query 454 GCTTTAAGAAGTGCAAGAAAGGGAGATCGTGTGCCTATGGGATGTGCGGCTATGCTTAAA 513
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 480 GCTTTAAGAAGTGCAAGAAAGGGAGATCGTGCGCCTATGGGATGTGCAGCTATGCTTAAA 539
Query 514 GAAACAATGTGGTATAAAAGTCATTAT--AAAA-TAAGTTTAATTTATTGGTTTAAATTG 570
|||| ||| ||| ||||| |||| || |||| ||| ||||||||||||||| ||||||
Sbjct 540 GAAAAAATATGGGATAAAGGTCACTAAGGAAAAATAATTTTAATTTATTGGTTGAAATTG 599
Query 571 GATTATATT---T--ATATTACTTACACTTCGAAATTAAAAGATTATATAGCTAGCTTAC 625
||||| ||| | ||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 600 GATTACATTCCCTTTATATTACATACACTTCGGAATTAAAAGATAATATAGCTAGCTTAC 659
Query 626 ATAACGGTCGAGTACTTGTTATTAAAGATAGAAAGGTCTTGTAAAAGTTTGTCATCATTA 685
||||||||| |||||||||| ||||||||| | |||||||||||||||||||||||| ||
Sbjct 660 ATAACGGTCTAGTACTTGTTCTTAAAGATATATAGGTCTTGTAAAAGTTTGTCATCACTA 719
Query 686 TTATATTGTTAAATTTTGTTTATACGCCCATGTCTCATGTAACAATCCCATGTATTATTA 745
||| |||||||||||| |||||| || |||||| ||||||||||||| |||||||||||
Sbjct 720 TTACATTGTTAAATTTA-TTTATATGCACATGTCACATGTAACAATCCAATGTATTATTA 778
Query 746 TTGAATAAAGTTTGAATTTATTAGT 770
|||||||||||||||||| ||||||
Sbjct 779 TTGAATAAAGTTTGAATTGATTAGT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5