BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471347
Length=2701
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11950.1 | Symbols: | Transcription factor jumonji (jmjC) d... 3999 0.0
> AT1G11950.1 | Symbols: | Transcription factor jumonji (jmjC)
domain-containing protein | chr1:4034587-4038758 REVERSE LENGTH=2955
Length=2955
Score = 3999 bits (2165), Expect = 0.0
Identities = 2543/2722 (93%), Gaps = 40/2722 (1%)
Strand=Plus/Plus
Query 12 AGTTTCTGCTAATGGAGTAAATT-GCAAGCGTAATGGTGTAAAGGATAGTTCACTGGAAA 70
|||| || |||| ||||| ||| ||||| ||||||||||||||||| ||| | ||||
Sbjct 179 AGTTGCTACTAACGGAGT-GATTCTCAAGCATAATGGTGTAAAGGATATTTCTTTAGAAA 237
Query 71 CTTGTTGGCCGGAGAAGAAGAAACCGGTTGAGGCAACGAGTCTTAGCAGCGGTTCATCAG 130
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 CTTGTTGGCCAGAGAAGAAGAAACCGGTTGAGGCAACGAGTCTTAGCAGTGGTTCATCAG 297
Query 131 ATATAGAAGAAGAGAGTAGTGTGGAATGTCCGAAACCAGTGGCTAATCAAAGACGGAAAC 190
| ||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||
Sbjct 298 ACATAGAAGAAGAGATTAGTGTGGAATGTCCTAAGCGAGTGGCTAATCAAAGACGGAAAC 357
Query 191 GCTCTAAAGCTGATGAGATTAAAGCGAAATCTTCaagaaagaggaaatgtgatgatgaga 250
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 GGTCTAAAGCTGATGAGATTAAAACGAAATCTTCAAGAAAGAGGAAATGTGATGATGAGA 417
Query 251 agaaatgtgaagaaaaggagaagaagcagaggagCTCTGTAAAAAAGAGAGCAACTACAT 310
| || |||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 ACAAGTGTGAAGAGAATGAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGCAACTACAT 477
Query 311 GGAAAGAAGAAGAAGTTGTCGATGATGATGAAAAGAAATGCGAACAAGAACTCCAAGTAG 370
||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||
Sbjct 478 GGAAAGAAGAAGAAGTTGTTGTTGATGATGAAAAGAAATGCGAACAACAACTCCAACTAG 537
Query 371 TTCCTTTCATCAAGGCAACATCTCGTAA-CAGGAGCAAGAACGCAGACAGTGCGGATGCT 429
|||||| || ||||||||||||||| || |||||||||||| ||| ||||| |||| ||
Sbjct 538 TTCCTTCCAGCAAGGCAACATCTCG-AAGCAGGAGCAAGAAATCAGTCAGTGTGGATACT 596
Query 430 TGGTTAGTTGGA-AACGAGATCGATGTTAGCGCTTCGAGTTCGCGTTCTGAGTCTGAACT 488
||||| ||| | |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 597 TGGTTGGTT-AACAACGAGATTGATGTTAGCGCTTTGAGTTCGCGTTCTGAGTCTGAACT 655
Query 489 TTCGGATTCTCATCTGAAAACTGAGTATTTTAATGACTGCAGACGCATGACAAGGAGTTT 548
|||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 656 TTCGGATTCTTATCTGAAAACCGAGTACTTTAATGACTGCAGAAGCATGACAAGGAGTTT 715
Query 549 AAAGGCAGATTTGGGAGAGCTTGCGATTTGCCATCAATGCTCGAAAGGGGAAAGAAGATA 608
||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 716 AAAGGCAAATTTGGGAGAGCTTGCAATTTGCCATCAATGCTCTAAAGGGGAAAGAAGATA 775
Query 609 TCTTTTCATTTGCACCTTTTGTGAAGAGAGGTTGTATTGTTTTCCATGTATAAAGAAATG 668
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 776 TCTTTTCATTTGCACCTTTTGTGAAGTGAGGTTGTATTGTTTTCCATGCATAAAGAAATG 835
Query 669 GTATCCCCATTTGTCCACGGATGATGTCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTG 728
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 836 GTATCCCCATTTGTCCACGGATGATATCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTG 895
Query 729 CAACTGCTCCACATGTTTGCACTCAAGTGGTTTAATCGAGACATCAAAGAGAAAGCTCGA 788
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 896 CAACTGCTGCACATGTTTGCACTCTAGTGGTTTAATCGAGACATCTAAGAGAAAGCTCGA 955
Query 789 TAAGTACGAAAGATTTTATCATCTTCGATACTTGATTGTGGCGATGCTTCCTTTCTTGAA 848
||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 956 TAAATACGAAAGATTTTATCATCTTCGCTTCTTGATTGTGGCGATGCTTCCTTTCCTGAA 1015
Query 849 AAAGTTATGCAAAGCACAAGATCAAGAAATCGAAACCGAGGCTAAGGTTCAAGGTTCAGT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1016 AAAGTTATGCAAAGCACAAGATCAAGAAATCGAAACCGAGGCTAAGGTTCAAGATTCAAT 1075
Query 909 GGCTTCTCAAGTTGATATATCCGAGAGTCTATGCTCAAATGAAGAGCGTGTCTTCTGTAA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GGCTTCTCAAGTTGATATATCCGAGAGTCTATGCTCAAATGAAGAGCGTGTCTTCTGTAA 1135
Query 969 CCATTGTGCAACCTCAATTGTGGACTTGCATCGAAGCTGTCCAAAGTGTTCCT-TCGAAC 1027
||| |||||||| |||||||| ||||||||||||||||||||||||||||| | | |||
Sbjct 1136 CCACTGTGCAACATCAATTGTTGACTTGCATCGAAGCTGTCCAAAGTGTTCATAT-GAA- 1193
Query 1028 TT-TGTCTGAACTGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCAGAACGCCCGGAATGT 1086
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1194 TTGTGTCTGAACTGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCTGACCGCCCGGAATGT 1253
Query 1087 CAGCTACAATTCGAGTATAAAGGGAGCCGGTACGTACATGGCGAAGATGCAGAACCGAGC 1146
||||||||||||||||| | ||||| |||||| |||||||||||| |||||||||||||
Sbjct 1254 CAGCTACAATTCGAGTACAGAGGGACCCGGTATATACATGGCGAAGCTGCAGAACCGAGC 1313
Query 1147 TCTTCTTCTGTTTCTGAGGATGAAACTACAATTCCATCCATGAAGTGGAATGCTGATGAA 1206
|||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 1314 TCTTCTTCTGTTTCCGAGGATGAAACTAAAACTCCATCCATCAAGTGGAATGCTGATGAA 1373
Query 1207 AATGGAAGCATACCGTGTGCGCCAAAAGAGCTAGGCGGTTGCGGTGACTCTGTGTTGGAG 1266
||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 1374 AATGGAAGCATACGGTGTGCGCCAAAAGAGCTAGGAGGTTGCGGGGACTCTGTGCTGGAG 1433
Query 1267 CTTAAGCGAATCCTACCCGTGACTTGGATTTCAGATTTGGAGCAAAAGGCAGAAACATTC 1326
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1434 CTTAAGCGAATCTTACCAGTGACTTGGATGTCAGATTTGGAGCAAAAGGCAGAAACATTC 1493
Query 1327 TTAGCCTCTTATTGTATCAATCCGCCAATGTCATATTGTAGATGTTCTTCTGATATGGAG 1386
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1494 TTAGCCTCTTATAGTATCAAACCGCCAATGTCATATTGTAGATGTTCTTCTGATAT-GAG 1552
Query 1387 ATGAGTATGAAGAGGCAGGCAGCTTCGAGGAACGAATCCAGTGACAATTACCTCTACTCT 1446
| |||||||||||| |||||||||||||| ||| ||| |||||||||||||| || |||
Sbjct 1553 -T-AGTATGAAGAGGAAGGCAGCTTCGAGGGACGGATCTAGTGACAATTACCTTTATTCT 1610
Query 1447 CCCGATTCTTTTGATGTCCTGAAGCAAGAAGAGCTTCTGCATTTCCAAGAGCATTGGTCC 1506
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1611 CCTGATTCTTTGGATGTCCTGAAGCAAGAAGAACTTCTGCATTTCCAAGAGCATTGGTCC 1670
Query 1507 AAAGGTGAACCAGTGATTGTTCGAAACGCTCTTAACAACACAGCTGGTTTAAGCTGGGAG 1566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1671 AAAGGTGAACCAGTGATTGTTCGAAATGCTCTTAACAACACAGCTGGTTTAAGCTGGGAG 1730
Query 1567 CCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTGATTCAGCAAGTAGCTCTACGATG 1626
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1731 CCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTGATTCAGCAATTAGCTCTAATATG 1790
Query 1627 TCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTGAAGATCAATACTCGATGT 1686
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1791 TCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTGAAGATAAATACTCTATGT 1850
Query 1687 TTCTTTGAAGGATATAGCAAAGGAAGAAGATATGATAACTTCTGGCCTGAGATGCTGAAG 1746
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1851 TTCTTTGAAGGATATAGCAAAGGAAGAACATATGAAAACTTCTGGCCTGAGATGCTGAAG 1910
Query 1747 TTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTTACCTCGTCACTGTGATGAG 1806
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1911 CTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTTACCTCGTCACTGCGATGAG 1970
Query 1807 TTCATTTCCGCATTACCGTTTCAAGAATACAGCGATCCTAGATCCGGAATTCTCAACATT 1866
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1971 TTCATTTCCGCATTACCATTTCAAGAATACAGCGATCCTAGATCAGGAATTCTCAACATT 2030
Query 1867 GCTACTAAACTTCCTGAAGGACTTCTTAAACCAGATCTTGGTCCAAAAACCTACATTGCA 1926
||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2031 GCTACAAAACTTCCTGAAGGACTTCTTAAACCAGATCTTGGTCCAAAAACTTATGTTGCA 2090
Query 1927 TATGGGACTTCAGATGAGCTCGGTAGAGGCGATTCTGTGACTAAGCTTCACTGTGATATG 1986
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 2091 TATGGGACTTCAGATGAGCTCGGTAGAGGAGATTCAGTCACTAAGCTTCACTGTGATATG 2150
Query 1987 TCGGATGCGGTTAATATTCTGATGCATACTGCTGAAGTAACACTAAGTGAGGAGCAAATG 2046
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2151 TCAGATGCTGTTAATATTCTGATGCATACTGCTGAAGTAACACTAAGTGAGGAGCAAAGG 2210
Query 2047 TCTGCAATTGAAGATTTGAAACAGAAACATAAGCAACAGAATGAGAAAGAGCTTCAGGAG 2106
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 TCTGCAATTGCAGATTTGAAACAGAAACATAAGCAACAGAATGAGAAAGAGCTTCAGGAG 2270
Query 2107 CAAA-T--T---GATGA-GA-----TTGTGA-T-AT-A--T-G------ATGA--AAA-A 2139
|||| | | || || || |||||| | || | | | |||| ||| |
Sbjct 2271 CAAAATGGTTTAGAGGAAGAAGAGGTTGTGAGTGATGAGATTGTGGTTTATGATGAAACA 2330
Query 2140 GGTGGTGCACTTTGGGACATCTTTAGAAGAGAAGATGTTCCTAAGCTTGAAGAGTATCTA 2199
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2331 AGTGGTGCACTTTGGGACATCTTTAAAAGAGAAGATGTTCCTAAGCTTGAAGAGTATCTA 2390
Query 2200 AGGAAGCATTGCAAAGAATTCAGACATACTTTTTGCTCTCCTGTTACAAAGGTGTATCAT 2259
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2391 AGGAAGCATTGCATAGAATTCAGACATACTTATTGCTCTCGTGTTACAAAGGTGTATCAT 2450
Query 2260 CCAATACATGATCAATCATGTTTCTTAACCGTGGAGCATAAACGAAAACTCAAGGCAGAA 2319
|||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2451 CCAATACATGATCAGTCATATTTCTTAACCGTGGAGCATAAAAGAAAACTCAAGGCAGAA 2510
Query 2320 TTTGGGATTGAGCCATGGACATTTGTGCAAAAACTAGGAGAAGCAGTGTTTATTCCCGCG 2379
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2511 TTTGGGATTGAGCCATGGACATTTGTGCAAAAGCTAGGAGAAGCAGTGTTTATTCCAGCA 2570
Query 2380 GGTTGTCCACATCAAGTTCGGAATCTCAAGTCTTGCACAAAGGTAGCTGTTGATTTTGTT 2439
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2571 GGTTGTCCTCATCAAGTTCGGAATCTCAAGTCGTGCACAAAGGTAGCTGTTGATTTTGTT 2630
Query 2440 TCCCCAGAGAACATCGATGAGTGTCTCCGTTTGACTGATGAGTTTAGACAACTCCCTAAG 2499
||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2631 TCCCCTGAAAACATCGATGAGTGTCTCCGTTTGACTGATGAGTTTCGACAACTCCCTAAG 2690
Query 2500 AACCATAAGGCTAGAGAAGACAAACTTGAGATAAAAAAGATGGTGATCTATGCAGTGGAA 2559
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2691 AACCATAAAGCCAGAGAAGACAAACTTGAGATAAAAAAGATGGTGATCTATGCAGTTGAA 2750
Query 2560 CAAGCTCTGAAAGAAGTGGAGACATTGTTGCTAGATCGCAGCTAAAAGCTCTATAGCTTT 2619
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2751 CAAGCTCTGAAAGAAGTGGAGACATTATTGCTAGATCGCAGCTAAAAGCTCTATAGCTTT 2810
Query 2620 GTTGTTGTAGGATTGACAGCAGATTTTGTAGGATTGTTAAAGCCATGGCTATTGTAGTTG 2679
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2811 GTTGTTGTAGGATTAACAGCAGATTTTGTAGAATTGTTAAAGCCATGGCTATTGTAGTTG 2870
Query 2680 GCTTTTGCTGTGATATATATAT 2701
|||||||||||||||||| |||
Sbjct 2871 GCTTTTGCTGTGATATATGTAT 2892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134146405582
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5