BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471348
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11990.1 | Symbols: | O-fucosyltransferase family protein |... 2078 0.0
> AT1G11990.1 | Symbols: | O-fucosyltransferase family protein
| chr1:4046246-4049060 REVERSE LENGTH=1773
Length=1773
Score = 2078 bits (1125), Expect = 0.0
Identities = 1250/1311 (95%), Gaps = 6/1311 (0%)
Strand=Plus/Plus
Query 424 CAGAACAAACTTGAG-CCAAAAGAGC-TATGGCAGGAGCCTAAGGAACAAGCTTCGGCGT 481
||||||||||||||| || ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 466 CAGAACAAACTTGAGACC-AAAGA-CTTATGGCAGGAGCCGAAGGAACAAGCTTCGGCGT 523
Query 482 GGAAGCCTTGCGCGGATCAACGTTCTTGGACTCCTGACGATGGCAAAAATGGATATATTA 541
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 524 GGAAGCCTTGTGCGGATCAACGTTCTTTGACTCCTGACGATGGCAAAAATGGATATATTA 583
Query 542 TGGTAACTGCAAACGGAGGGATTAATCAACAAAGAGTTGCTGTATGTAACATCGTTGTTG 601
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 584 TGGTAACTGCAAACGGAGGGATTAATCAGCAAAGAGTTGCTGTATGTAACATTGTTGTTG 643
Query 602 TAGCCCGATTGCTCAATGCGGCTCTCGTCATTCCCAAATTCATGTTAAGTGACGTTTGGA 661
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TAGCTCGATTGCTCAATGCGGCTCTCGTCATTCCCAAATTCATGTTAAGTGACGTTTGGA 703
Query 662 CAGATGCAAGTCAGTTTGGAGATATCTACCAAGAGGACCATTTTATGGAGTACTTGTCGC 721
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 704 CAGATGCAAGTCAGTTTGGAGATATCTACCAAGAGGAACATTTTATGGAGTACTTGTCGC 763
Query 722 CCGATATTCGGATAGTAACGGAACTACCAGAGGAGCTTCAATCT-TTGGACCTTGAAGAA 780
|||||||||||||||||| ||| |||||| | |||||||||||| || | |||||||||
Sbjct 764 CCGATATTCGGATAGTAAAGGAGCTACCAAAAGAGCTTCAATCTCTTA-ATCTTGAAGAA 822
Query 781 ATCGGTAGCGTCGTGACAGATATAGAAGTGATGAAAGAAGCCAAACCAGACTTCTATATG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 823 ATCGGTAGCGTCGTGACAGATATAGAAGTGATGAAAGAAGCCAAACCAGACTTTTATATG 882
Query 841 ACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTCGTTGGATTCGGAAAC 900
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 883 ACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTTGTCGGATTCGGAAAC 942
Query 901 CGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGAGGCTTCGATGCAGATGTAACTTT 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 943 CGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGAGGCTTCGGTGCAGATGTAACTTT 1002
Query 961 CACGCGCTAAACTTTGTCCCGAGAATACAAGAAACTGCGGCATTGCTCGTGAGGAGATTA 1020
|| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1003 CATGCGCTAAACTTTGTCCCGAGGATACAAGAAACTGCGGCATTGCTCGTGAAGAGATTA 1062
Query 1021 CGGGACAGCGGATCATACTACCTCGCTCTCCATTTACGGTTTGAAATCGACATGGTGGCT 1080
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1063 CGGGGCAGTGGATCTTACTACCTTGCTCTCCATTTACGGTTTGAAATCGACATGGTGGCT 1122
Query 1081 CATTCTCTGTGTTACTTCGGAGGAGGAGAAACAGAACAGAAAGAGTTGGATTCTTACCGC 1140
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1123 CATTCTCTATGTTACTTCGGAGGAGGTGAAACAGAACAGAAAGAGTTGGATTCTTACCGC 1182
Query 1141 CAAAAACACTTTCCATCTCTTTCAACTTTAACCaaaaaaaaaaaaTTTCGGTCCGCGGAT 1200
|||||||||||||||||||||||||||||||||| |||||||||||| || || ||||||
Sbjct 1183 CAAAAACACTTTCCATCTCTTTCAACTTTAACCAGAAAAAAAAAATTCCGATCTGCGGAT 1242
Query 1201 GTTTTGAGGACGGAAGGACTTTGTCCATTAACACCCGAAGAAGCTGTGCTTATGCTCGCG 1260
||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1243 GTTTTGAGGACAGAAGGACTTTGTCCACTAACACCCGAAGAAGCCGTGCTTATGCTCGCG 1302
Query 1261 GCTCTTGGCTTCAACCGTGAAACCCGAGTTTTCGTAGCTGGTGCAAACATATATGGAGGA 1320
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GCTCTTGGCTTCAACCGCGAAACCCGAGTTTTCGTAGCTGGTGCAAACATATATGGAGGA 1362
Query 1321 TCAAAACGGTTAGCCGTGTTAACGAGCTTATACCCGAATCTAGTCACCAAAGAGAAGTTA 1380
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1363 TCAAAACGTTTAGCCGTGTTAACTAGCTTATACCCGAATCTAGTCACCAAAGAAAAGTTA 1422
Query 1381 CTAACAGAATCCGAACTACAACCATTTAAAAACTTTTCATCTCAGCTAGCGGCTTTAGAT 1440
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1423 CTAACAGAATCCGAACTACAACCATTCAAAAACTTTTCATCTCAGCTAGCGGCATTAGAT 1482
Query 1441 TTCATCGCTTGTGCTGCGGCAGACGCGTTTGCGATGACGGATTCAGGGAGTCAGTTATCG 1500
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1483 TTCATCGCTTGTGCTGCAGCAGACGCTTTTGCGATGACGGATTCAGGGAGTCAGTTATCA 1542
Query 1501 TCTCTTGTATCGGGGTATCGGATATATTACGGAGGAGGGAAAATGCCGACGATTAGACCG 1560
|||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1543 TCTCTTGTATCGGGTTATCGGATTTATTACGGAGGAGGGAAATTGCCGACGATAAGACCG 1602
Query 1561 AACAAACGGAGACTTTCGGACATACTGTTGAAGAACAGTACCATTGAGTGGAATGTGTTC 1620
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1603 AACAAACGGAGACTTTCGGACATATTGTTGAAGAACAGTACGATTGAGTGGAACGTGTTT 1662
Query 1621 GAGCGAAGAGTGAGAAAAGCGATTAGACAGACAAAACATGTATTCGCTAGACCTAATGGA 1680
||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1663 GAGAAAAGAGTAAGAAAAGCGATTAGACAGACGAAACATGTATTCGCTAGACCTAATGGA 1722
Query 1681 CGCAGCGTTTACCGTTACCCAAGGTGTAAAGAATGTATGTGTCATGCATGA 1731
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1723 CGCAGCGTTTACCGTTACCCAAGATGTAAAGAATGTATGTGTCATGCATGA 1773
Score = 625 bits (338), Expect = 5e-178
Identities = 396/424 (93%), Gaps = 4/424 (1%)
Strand=Plus/Plus
Query 1 ATGGGACAAGAAAGACCTAACGACGAAGAGAGACCAGAGTCACGTGATCTAGGTGTCTAC 60
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1 ATGGGACAAGAAAGACCTAACGACGAAGAGAGACCCGAGTCACGTGATCTTGGGGTCTAC 60
Query 61 GGATGTTCACCGCCTCATTCACCGCGTCTCGGCCCCAACAGGTTCTCA-GTTTTTGCCGG 119
|||||||||||||||||||| ||||||||||| || | |||||||| | || ||||| ||
Sbjct 61 GGATGTTCACCGCCTCATTCGCCGCGTCTCGGTCCGACCAGGTTCT-ACGTCTTTGCTGG 119
Query 120 AGACCCGAATCCAAAACTAACGATAAAGCGATGCAAGAGGAAGAGAATCCAAGCTTGTAA 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGACCCGAATCCAAAACAAACGATAAAGCGATGCAAGAGGAAGAGAATCCAAGCTTGTAA 179
Query 180 CGATCAAAGAACGGCTACAGCAGCCATTGGCGTTATGGCGATTTTGGGTTTCTTTTGCCT 239
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 180 CGATCAAAGAACGGCTAAAACAGCTATTGGCGTTATGGCGATTTTGGGTTTCTTTTGCCT 239
Query 240 CGTTAATTGGTTCATGCTCTCTCGCCTTCACGAAGGTCGGGTCTGGCTTCGAAGAGGACT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTTAATTGGTTCATGCTCTCTCGCCTTCACGAAGGTCGGGTCTGGCTTCGAAGAGGACT 299
Query 300 CTCTAATAACCCAAAACTTGTTTCTGCACAGAATGAAGAGCGCCAAAAGTTCGAAAAGCC 359
|||| | |||||||||| |||||||||||||||||||||||| ||||||| ||||| |
Sbjct 300 CTCTGAGAACCCAAAACATGTTTCTGCACAGAATGAAGAGCGTAAAAAGTTTGAAAAAC- 358
Query 360 A-AAGAGGAAATATAATGGAACTTATGGTAGAATGTTGAGTTTGGCTGCTCATGCTTTGG 418
| |||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 359 AGAAGATGAAATATAATGGAACATATGGTAGAATGTTGAGTTTGGCTACTGATGCTTTGG 418
Query 419 CAGA 422
||||
Sbjct 419 CAGA 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85591929225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5