BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471351
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1033 0.0
> AT1G12020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62422.1);
Has 89 Blast hits to 88 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:4062462-4063337
REVERSE LENGTH=876
Length=876
Score = 1033 bits (559), Expect = 0.0
Identities = 698/764 (91%), Gaps = 13/764 (2%)
Strand=Plus/Plus
Query 1 tctctctctctctATTCCATAGAAAACCTATGAAGAAGCTCTACAGAAAAGGAACCGTAC 60
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 6 TCTCTCTCTCTCTCTTCCATAGAAAA--TATGAAGAAGCTCTACAGAAAAGGAACCGTAC 63
Query 61 ACCCGTCGCCGCCGCAGATAAAATCCGACGACCACCTTCTCCCTCTCCTTCCCGTCGCCA 120
|||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |
Sbjct 64 ACCCGTCGCCGCCGCAGATAAAATCCAACGACCACCTTCTTACTCTTCTTCCCGTCGCTA 123
Query 121 TCTTCTCTCTCGCGGCGGTTCTCTCGCCGGAAGACCGTGAAGTTTTGGCCTATCTCATAT 180
| ||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 124 TTTTCTCACTAGCGGCGGTTCTCTCACCGGAAGACCGTGAAGTTTTAGCCTATCTCATAT 183
Query 181 CAACCGCTTCTTACTCCGGCGACCGAAACCCTACCTCTCGTCTGAATAAGACCAAAGCCA 240
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 184 CAACCGCATCTTACTCCGGCGAGCGAAACCCTACCTCTCGCCTGAATAAGACCAAAGCCC 243
Query 241 ACAAGAAAA-CCCATTTCGACAATCACTCGCCTCTCTTCCACTGTGACTGCTTTAGCTGC 299
|||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 ACAA-AAAAGCCCTTTTCGACAATCACTCGCCTCTTTTCCACTGTGACTGCTTTAGCTGC 302
Query 300 TACACGAGTTACTGGGTCAGATGGGACTCGTCACCGAGTCGTCAGCTTATTCATGAAATC 359
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 303 TACACGAGTTACTGGGTTAGATGGGACTCGTCACCGAGTCGGCAGCTTATTCATGAAATC 362
Query 360 ATCGACGCTTTCgaagatagcttggagaagaagaggaa---gaa---gaacgttactgga 413
||||| || ||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct 363 ATCGATGCCTTCGAAGATAGCTTGGAGAAGAACAAGAACAAGAAAAAGAACGTTACTGGT 422
Query 414 aagaaagatcgaagaaagCGTTCAGGGAAGTCTTCTTCAATTCTTGCTAGTTCTAGCTTT 473
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 423 AAGAAAGATAGAAGAAAGCGTTCAGGGAAGTCTTCTTCACTTCTTGCTAGTTCTAGCTTT 482
Query 474 AGTACGGAAGAATCAGAGATTCCGAGTCGACTCGGCGAGTCAGTTGTGAATTCGTGTCCA 533
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 483 AGTACGGATGACTCAGAGATTCCGAGTCGACTCGGTGAGTCAGTTGTGAATTCGTGTCCG 542
Query 534 TGTTCAAGTTCGAGCGAGTTGGCTCAAAATGGTGGTGGTTGCAACGGCGGTATGGAGCCA 593
||| | ||||| ||||||||| ||||| |||| |||||||||| ||||||| |||| |||
Sbjct 543 TGTACGAGTTCAAGCGAGTTGACTCAAGATGGAGGTGGTTGCAGCGGCGGTTTGGAACCA 602
Query 594 ACGGATGATTTTT-GTGCCCGAGACGCTTGTGAGGAGGCGGAGGATGAGAAGGGAACCGT 652
| ||| | ||||| ||||| |||||||||||||| ||| |||||| ||||||||||||||
Sbjct 603 ATGGA-GTTTTTTTGTGCCGGAGACGCTTGTGAGAAGGTGGAGGAGGAGAAGGGAACCGT 661
Query 653 GAGGAGATTTTTGAGTTTCATTGGTGAGAAAGTTTTAGGTGTTTGGGGATAAGAAAGTTT 712
|||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 662 GAGGAGATTTGTGAGTTTTATTGGTGAGAAAGTTTTTGGTGTTTGGGGATAAGAAAATTT 721
Query 713 TGCCTATAAAATTACAAGAAATAAAATGTTAGAAATGttttttt 756
||| || ||||||||||||||||||||| | |||||| ||||||
Sbjct 722 TGC-TACAAAATTACAAGAAATAAAATGCTCGAAATGGTTTTTT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5