BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471352
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12030.1 | Symbols: | Protein of unknown function (DUF506) ... 1476 0.0
> AT1G12030.1 | Symbols: | Protein of unknown function (DUF506)
| chr1:4064667-4066341 REVERSE LENGTH=994
Length=994
Score = 1476 bits (799), Expect = 0.0
Identities = 935/1000 (94%), Gaps = 12/1000 (1%)
Strand=Plus/Plus
Query 1 GAAATCAAGAAAAAGGCATAAAATGGTAGAGATAGGGGGACGATTTATCAGAACAGCGGC 60
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAAATCAAGAAAAGGGCATAAAATGGTAGAGATAGGAGGACGATTTATCAGAACAGCGGC 60
Query 61 GGCTTTTGATGTAGCGGCGGCGCGTGCACGTCCTCCGTGCGCTAGCAGCAGCGGAAGCGA 120
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GGCTTTTGATGTGGCGGCGGCGCGTGCACGCCCTCCGTGCGCTAGCAGCAGCGGAAGCGA 120
Query 121 TCACTCTCCGGATGACTCAGAAGATCTTTGGGATCTGGTCGAGTCTTTTATCGACAGAGA 180
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCACTCTCCGGATGACACAGAAGATCTTTGGGATCTGGTCGAATCTTTTATCGACAGAGA 180
Query 181 AGTGGAAACTTTACCTGAGGAGGCTTTTGAGGAAGAAG-A-A-GATAAATCGGATGAGGA 237
||||||||||||||||||||| |||||| ||||||||| | | |||||||||||||||||
Sbjct 181 AGTGGAAACTTTACCTGAGGATGCTTTTCAGGAAGAAGAAGATGATAAATCGGATGAGGA 240
Query 238 TTACGAAGATGTGAAGGAAAGGTTACGGGAGATTCTTGAAAATCACGGAGGCGAAGAGCG 297
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 TTACGAAGATGTGAAGGAGAGGTTACGGGAGATTCTTGAAAACCACGGAGGCGAAGAGCG 300
Query 298 GCGGAGAATCATGGATGAGGCGGTTAATGCTAGTCGGTTCGTGGTCGGAGAAAAACGTCA 357
|| |||||| |||||||||||||| |||||||||||| || | | ||| || ||||||||
Sbjct 301 GCAGAGAATAATGGATGAGGCGGTAAATGCTAGTCGGGTCTTCGCCGGGGAGAAACGTCA 360
Query 358 ATTTATGGCTTATCTACGTAACAAAGGTTTTGATGCAGGTCTCTGCAAGTCCCGGTGGGA 417
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 361 CTTTATGGCTTATCTACGTAACAAAGGTTTTGATGCAGGTCTCTGCAAGTCTCGATGGGA 420
Query 418 GAAATTTGGTAAGAACACGGCCGGGAAGTACGAGTACGTGGACGTCAAGGTAGGAGATAA 477
||||||||||||||||||||| |||||||||||||| || ||||| |||| |||||||||
Sbjct 421 GAAATTTGGTAAGAACACGGCTGGGAAGTACGAGTATGTAGACGTTAAGGCAGGAGATAA 480
Query 478 GAACCGTTACATCGTCGAGACAAATCTTGCCGGAGAGTTCGAGATTGCTCGGCCAACGAC 537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 GAACCGTTACATCGTCGAGACAAATCTTGCCGGAGAGTTCGAGATTGCACGGCCAACGAC 540
Query 538 AAGATACCTCTCCCTCTTAGCTCAACTGCCGCGTGTCTTTGTGGGAACACCTGAGGAGCT 597
||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 541 AAGATACCTCTCCGTCTTAGCTCAAGTGCCACGTGTCTTTGTGGGAACACCTGAGGAGCT 600
Query 598 GAAACAGCTTGTGAGGATCATGTGCTTTGAGATCAGGCGGTCGATGAAGCGAGCCGAGAT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 601 GAAACAGCTTGTGAGGATCATGTGCTTTGAGATCAGGCGGTCGATGAAGCGAGCGGATAT 660
Query 658 TTACGTGCCGCCATGGAGAAGGAACGGTTATATGCAAGCCAAGTGGTTTGGTCACTATAA 717
|| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 661 TTTCGTGCCGCCGTGGAGAAGGAATGGTTATATGCAAGCCAAGTGGTTCGGTCACTATAA 720
Query 718 ACGAACCTCTAACGAAGTGGTGAGTAGGGTTAAGAGCTGTGGCTGTGGACCGCGTGTAGG 777
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 ACGAACCTCAAACGAAGTGGTGAGTAGGGTTAAGAGCTGCGGCTGTGGACCGCGTGTAGG 780
Query 778 GTTTGAAGAATCGGTTAAAACGACGGCGTTTATTGGCTTTAACGAGGGGGAGATGAAGAG 837
|||||||||||||||||||| |||| | |||| ||| ||||| || |||||||||| |||
Sbjct 781 GTTTGAAGAATCGGTTAAAATGACGACCTTTAATGGTTTTAAAGATGGGGAGATGAGGAG 840
Query 838 GAGTGGCT-TAAAGGTTGGCCGGCTTACGGTGGCTTTCACCGGCAGTGAAGTGGGGTTGC 896
|||||| | |||||||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 841 GAGTGG-TCTAAAGGTTGGCCAGCTAACGGTGGCTTTCAACGGCAGTGAAGTGGGGTTGC 899
Query 897 AAATATTTTAGAATAAAGTATAGGGCTCTAGGTGTTGATGTTTCAGAGTTCTTTAGAGCA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 900 AAATATTTTAGAATAAAGTATAGGGCTCTAGGTGTTGATGTTTCAGAGTTCTTTATA-C- 957
Query 957 TACTTTATTGTAAATGTATA-A-GCTTTGGGGGTTTAGAG 994
|| | ||||||||| |||| | | |||||||||||||||
Sbjct 958 TA-T--ATTGTAAATATATATAAGTTTTGGGGGTTTAGAG 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5