BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471353
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12050.1 | Symbols: | fumarylacetoacetase, putative | chr1:... 2259 0.0
> AT1G12050.1 | Symbols: | fumarylacetoacetase, putative | chr1:4072752-4076207
FORWARD LENGTH=1675
Length=1675
Score = 2259 bits (1223), Expect = 0.0
Identities = 1371/1438 (95%), Gaps = 28/1438 (2%)
Strand=Plus/Plus
Query 1 AGTCATCATCTCAAAAACGGCATCTTAAGaaaaaaaaTCTATACCTACCACTTCGAACTA 60
|||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 1 AGTCATCATCTCAAAAACGGAAGCTTAAG---AAAAATCTATACCTACCACTTCGAACTA 57
Query 61 ACTCTTCTCTATCGC-AACTAGAAATTGGGGATTAGCTTGGGAAACTTCGCCGGAGATTC 119
||||| |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 58 ACTCTCCTCTCTCGCTTACTGGAATTTGGGGATTAGCTTGGGAAACTTCGCCGGAGATTC 117
Query 120 ATA------CGTCGTC----G--TC-G--TC--C-ATGGCGTTGCTGAAGTCCTTT-ATC 160
||| ||||||| | || | || | |||||||||||||||| |||| |||
Sbjct 118 ATACGTCGTCGTCGTCTTTAGTATCTGTATCGTCAATGGCGTTGCTGAAGT-CTTTCATC 176
Query 161 GATGTTGGCTCAGACTCACACTTCCCTATCCAGAATCTCCCTTATGGCGTCTTCAAACCG 220
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 177 GATGTTGGCTCAGACTCGCACTTCCCTATCCAGAATCTCCCTTATGGTGTCTTCAAACCG 236
Query 221 GAATCGAACTCAACTCCTCGTCCTGCCGTCGCTATCGGCGATTTGGTTCTGGACCTCTCC 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAATCGAACTCAACTCCTCGTCCTGCCGTCGCTATCGGCGATTTGGTTCTGGACCTCTCC 296
Query 281 GCTATCTCCGAAGCTGGGCTTTTCGATGGTCCGATCCTTAAGGACGCCGATTG-TTTCCT 339
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||| ||
Sbjct 297 GCTATCTCTGAAGCTGGGCTTTTCGATGGTCTGATCCTTAAGGACGCAGATTGCTTT-CT 355
Query 340 TCAGCCTAATTTGAATAAGTTCTTGGCTATGGGACGGCCTGCATGGAAGGAAGCGCGTTC 399
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 356 TCAGCCTAATTTGAATAAGTTCTTGGCCATGGGACGGCCTGCGTGGAAGGAAGCGCGTTC 415
Query 400 TACGCTTCAAAGAATCTTGTCATCTAATGAACCTATCTTGCGCGACAATGATGTTTTGAG 459
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 416 TACGCTGCAAAGAATCTTGTCATCTAATGAACCTATCTTGCGAGACAATGATGTTTTGAG 475
Query 460 GA-AAAAGTCATTCTATGAGATGAGTAAAGTGGAAATGATTGTTCCTATGGTGATTGGGG 518
|| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GAGAAAA-TCATTCCATCAGATGAGTAAAGTGGAAATGATTGTTCCTATGGTGATTGGGG 534
Query 519 ACTATACAGACTTCTTTGCATCTATGCATCACGCGAAGAACTGCGGGCTTATGTTTCGTG 578
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 535 ACTATACAGACTTCTTTGCATCTATGCATCACGCGAAGAACTGCGGACTTATGTTCCGTG 594
Query 579 GGCCTGAGAATGCGATAAACCCAAATTGGTTTCGTCTTCCCATTGCATATCATGGACGGG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGCCTGAGAATGCGATAAACCCAAATTGGTTTCGTCTTCCCATTGCATATCATGGACGGG 654
Query 639 CATCATCTATTGTCATCTCTGGGACCGACATTATTCGACCAAGAGGTCAGGGCCATCCGC 698
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 655 CATCATCTATTGTCATCTCTGGGACTGACATTATTCGACCAAGAGGTCAGGGCCATCCAC 714
Query 699 AAGGAAACTCTGAACCATATTTTGGTCCTTCGAAGAAACTTGATTTTGAGCTTGAGATGG 758
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 AAGGAAACTCTGAACCATATTTTGGACCTTCGAAGAAACTTGATTTTGAGCTTGAGATGG 774
Query 759 CTGCTGTGGTTGGTCCAGGAAATGAATTGGGAAAGCCTATTGACGTGAATAATGCAGCCG 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CTGCTGTGGTTGGTCCAGGAAATGAATTGGGAAAGCCTATTGACGTGAATAATGCAGCCG 834
Query 819 ATCATATATTTGGTCTAGTACTGATGAATGACTGGAGTGCTAGGGATATTCAGGCGTGGG 878
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATCATATATTTGGTCTATTACTGATGAATGACTGGAGTGCTAGGGATATTCAGGCGTGGG 894
Query 879 AGTATGTACCTCTTGGTCCTTTCCTGGGGAAGAGTTTTGGGACTACGGTATCCCCTTGGA 938
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 895 AGTATGTACCTCTTGGTCCTTTCCTGGGGAAGAGTTTTGGGACTACTATATCCCCTTGGA 954
Query 939 TTGTTACCTTGGATGCGCTTGAGCCTTTCGGTTGTCAAGCTCCCAAGCAGGATCCACCTC 998
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 955 TTGTTACCTTGGATGCGCTTGAGCCTTTTGGTTGTCAAGCTCCCAAGCAGGATCCACCTC 1014
Query 999 CATTGCCATATTTGGCTGAGAAAGAATCTGTAAATTACGATATCTCCTTGGAGGTTCAAC 1058
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1015 CATTGCCATATTTGGCTGAGAAAGAGTCTGTAAATTACGATATCTCCTTGGAGGTTCAAC 1074
Query 1059 TTAAACCTTCTGGCAAAGATGATTCTTGTGTAATAACAAAGAGCAACTTCCAAAACTTAT 1118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TTAAACCTTCTGGCAGAGATGATTCTTGTGTAATAACAAAGAGCAACTTCCAAAACTTAT 1134
Query 1119 ATTGGACCATAACGCAGCAGCTAGCACACCATACCGTTAACGGTTGCAATTTGAGGCCTG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATTGGACCATAACGCAGCAGCTAGCACACCATACCGTTAACGGTTGCAATTTGAGGCCTG 1194
Query 1179 GCGATCTCCTTGGCACCGGAACCATAAGCGGACCGGAGCCAGATTCATATGGGTGCCTAC 1238
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTGATCTCCTTGGCACAGGAACCATAAGCGGACCGGAGCCAGATTCATATGGGTGCCTAC 1254
Query 1239 TTGAGTTGACTTGGAATGGACAGAAACCTCTATCACTCAGCGGAACAACTCAGACGTTTC 1298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1255 TTGAGTTGACATGGAATGGACAGAAACCTCTATCACTCAATGGAACAACTCAGACGTTTC 1314
Query 1299 TCCAGGACGGAGACCAAGTCACCTTGTCAGGTGTATGCAAGGGAGATGGTTACAATGTCG 1358
|| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1315 TCGAAGACGGAGACCAAGTCACCTTCTCAGGTGTATGCAAGGGAGATGGTTACAATGTTG 1374
Query 1359 GGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGATCAGCTCTCGCCGG 1416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1375 GGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGATCAGCTGTCGCCGG 1432
Score = 115 bits (62), Expect = 1e-24
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1483 TCTCGATATTGGCGTAATATGTTATTGAATCTTTTATAAAGAAAGACAACGGAATATTAA 1542
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1532 TCTCGATATTAGTGTAATATGTTACTGAATCTTTTATAAAGAAAGACAACGGAATATTAG 1591
Query 1543 TAACTTTCAATATGAAA 1559
||||||||||||| |||
Sbjct 1592 TAACTTTCAATATAAAA 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5