BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471354
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12060.1 | Symbols: ATBAG5, BAG5 | BCL-2-associated athanoge... 784 0.0
> AT1G12060.1 | Symbols: ATBAG5, BAG5 | BCL-2-associated athanogene
5 | chr1:4076334-4076981 FORWARD LENGTH=648
Length=648
Score = 784 bits (424), Expect = 0.0
Identities = 530/581 (91%), Gaps = 8/581 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAGTTCaaaaaaaTTCTCATCGTCGTCAACAACCACCACCGTTATCCACACTTTC 60
|||||| |||||| |||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 1 ATGAAACGTTCAAGAAAATTCTCATCGTCGACAACAACAACCACCGTTATTCACACTTTC 60
Query 61 GATAATGACCATATTTCCCATCCAGCAACCAAACAAATCCCGATTGAAACTCCATCTTCG 120
|||||||||||| | ||| ||| ||||||||| ||||||||||||||||||||| | |
Sbjct 61 TATAATGACCATACTACCCCTCCGGCAACCAAAGAAATCCCGATTGAAACTCCAT-TAC- 118
Query 121 ACGACGACGAGAGCCACCGACCAGACTAACGCTGCCGCCGCAGCAGCCAGGATCCAGTCT 180
|| |||||| ||||| || | | || ||||| ||||||||||||| ||||| ||||||
Sbjct 119 -CGGCGACGAAAGCCAACGTCAAAACAAACGCCACCGCCGCAGCAGCGAGGATTCAGTCT 177
Query 181 GGCTATCGTTCTTACAGGATCCGAGGCCTATACAAGAAAATCTCATCCGTCAATCGGGAA 240
||||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 178 GGCTACCGTTCTTATAGGATCCGAAACCTATACAAGAAAATCTCATCCATCAATCGGGAA 237
Query 241 GCGAACCGTGTACAGAGCATAATCCAACGGCAAGAAACAGTAGACGCCATTAGAAGCAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 GCGAACCGTGTACAGAGCATAATCCAACGGCAAGAAACAGTAGACGCCATTAGAAGCGAT 297
Query 301 GAGAAAGAACGGCTGAGAATGAACGAGACTTTAATGTCTCTGCTTCTGAAACTAGATTCC 360
||||| ||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||
Sbjct 298 GAGAAGGAACGTCTGAGAATGAACGAGACTCTGATGGCTCTGCTTCTGAAACTAGACTCC 357
Query 361 GTTCCTGGTTTAGATCCGACGATAAGAGAAGCTCGGAGGAAAGTGAGCCGTAAGATCGTA 420
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 GTCCCTGGTTTAGATCCGACGATCAGAGAAGCTCGGAGGAAAGTGAGCCGTAAGATCGTA 417
Query 421 GGGATGCAGGAAATACTCGATTCAATCTCGGAGACTAAAGACGAAATTCAGTGGTGGTCT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 418 GGGATGCAGGAAATACTCGATTCAATCTCGGAGACTAAAGACGAAATTCAATGGTGGAAT 477
Query 481 TACAACGATCTCGG---AGTCGA-TGCCGGACAAGGCGGCGGCGCGTGGCCTTTGTATTG 536
|||||||||||||| ||| || | ||||||||||||| ||||||||||||||||||||
Sbjct 478 TACAACGATCTCGGCGGAGTAGACT-CCGGACAAGGCGGTGGCGCGTGGCCTTTGTATTG 536
Query 537 GGAAGAAGCGGTGGAGGAAGAGATGTGTAGAGAGAAAGGCG 577
||||||||||||||||||||||||||||||||||| |||||
Sbjct 537 GGAAGAAGCGGTGGAGGAAGAGATGTGTAGAGAGAGAGGCG 577
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 577 GATGTTTCCAGAGATTTCTCAGAGAATGA 605
|||||||||||||||||||||||||||||
Sbjct 620 GATGTTTCCAGAGATTTCTCAGAGAATGA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5