BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471355

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12064.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   603    7e-172


> AT1G12064.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 35333 Blast hits to 34131 proteins in 2444 
species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi 
- 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 
(source: NCBI BLink). | chr1:4077498-4078095 REVERSE LENGTH=598
Length=598

 Score =  603 bits (326),  Expect = 7e-172
 Identities = 440/493 (89%), Gaps = 15/493 (3%)
 Strand=Plus/Plus

Query  1    AATAACATTCTCGAAGATACAAATTT-C-AACTCTCTCACAAACCAAAACCAAAATCCAA  58
            |||||||||||| |||||| |||||| | ||||||||||||||||||||||||| |||||
Sbjct  1    AATAACATTCTCAAAGATATAAATTTCCAAACTCTCTCACAAACCAAAACCAAATTCCAA  60

Query  59   TATGAAGAAGACCTACAACAAGTTTCAAAGCATCTTCTCTTCTCTCATCATCCTCATAAT  118
             |||||||||||||   ||||| |||||||| ||||||||||||||||| |||||   ||
Sbjct  61   CATGAAGAAGACCT---ACAAGCTTCAAAGCCTCTTCTCTTCTCTCATCTTCCTC---AT  114

Query  119  AATCCTGCTATCGGTTTCGAGAGCCGCCG-C-TACTGGCTCCGGTGGTGTTTGTCGGCAT  176
            |||| |||||| | ||||||||||||| | | | | ||||| || ||||| || ||||||
Sbjct  115  AATCTTGCTATTGATTTCGAGAGCCGCGGCCGT-C-GGCTCTGGCGGTGTCTGCCGGCAT  172

Query  177  CCGCCGTCACAAAACAGCTGCAAGACATGCATGGCGGAGCAAATGATATACGCCTGCCCT  236
            || || |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  173  CCACCATCACAAAACAGCTGCAAGACATGCATGGCGGAGCAAATGAAATACGACTGCCCT  232

Query  237  AAGTGCGTGCCGGTGCTCCGTTGCATGGCTCGTTGCCTTTGGGGCGGTGTGACACAGAGG  296
            |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct  233  AAGTGCGTGCCGGTGCTCCGATGCATGGCTCGTTGTCTTTGGGGCGGTGTTACTCAGAGG  292

Query  297  AAGTGCACCACCACGTGTGGATGCGACACGGCGGCCAAGCCGTCGCTGCTGGAGTGTAAA  356
            |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct  293  AAGTGCACCACCACGTGTCGATGCGACACCGCGGCCAAGCCGTCGTTGCTGGAGTGTAAA  352

Query  357  CGCTGCGTTTCAAGGTGTAAGTGTAGCTGTGCGGCTTAGGAACAAATCGACTTAATGCTC  416
            ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct  353  CGCTGCGTTTCTAGGTGTAAGTGTAGCTGTGCGGCTTAGGAACAAATCGAGTAAATGCTC  412

Query  417  TCTTGATGTTAAAATAATGTGTTAAATGTTGG-ATCTTTG-TCTTTGTCG-TTTAACTTG  473
            |||||||| ||||||||| |||||||||||   || || | ||||||||  |||||||||
Sbjct  413  TCTTGATGGTAAAATAATATGTTAAATGTTACCATGTTGGATCTTTGTCTCTTTAACTTG  472

Query  474  GTGTTGTATATGT  486
             |||| |||||||
Sbjct  473  ATGTTATATATGT  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5