BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471358
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12080.2 | Symbols: | Vacuolar calcium-binding protein-rela... 1085 0.0
AT3G59370.1 | Symbols: | Vacuolar calcium-binding protein-rela... 287 1e-76
AT1G62480.1 | Symbols: | Vacuolar calcium-binding protein-rela... 80.5 2e-14
> AT1G12080.2 | Symbols: | Vacuolar calcium-binding protein-related
| chr1:4084162-4085045 FORWARD LENGTH=701
Length=701
Score = 1085 bits (587), Expect = 0.0
Identities = 668/706 (95%), Gaps = 9/706 (1%)
Strand=Plus/Plus
Query 1 ATTTGCTTCTACTATAAATA--CC-CCTCTTGATCAAATATCTTCACTCACCAAAGCATC 57
|||||||||||||||||||| || |||||||||||||| |||||||||| |||| ||||
Sbjct 1 ATTTGCTTCTACTATAAATACCCCTCCTCTTGATCAAATCTCTTCACTCATCAAAACATC 60
Query 58 ACATACTCTATTTTTCTCCTCTCCTTATTGTCTATATATTTAGATATCCTCTTTAGCTTT 117
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 61 ACATACACTATTTTTCTCCTCTCCTTATTGTCTATATATTT---T-TCCTCTTTAGCTTT 116
Query 118 TTCATTTCGAAATGGCCACCGTTGAGGTTGAACAAGTGACTCCAGTAGCAGTAGAGAACG 177
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 117 TTCATTTCGAAATGGCCACCGTTGAGGTTGAACAAGTCACTCCAGTAGCAGTAGAGAACG 176
Query 178 TTGAGGTACCAACAAAGACAGTGGAGGAGCCAGTGGTGGAGACAGAGGTGACCCAACAGC 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 177 TTGAGGTACCAACAAAGACAGTGGAGGAGACAGTGGTGGAGACAGAGGTGACCCAACAGC 236
Query 238 CGGAAGAATCCGTCCCCGCCGTGACAGAACAAGAATCCGAAGCACCAGTTGTagaaacga 297
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct 237 CGGAAGAATCCGTCCCCGCCGTGACAGAACAAAAATCCGAAGCACCAATTGTAGAAACAA 296
Query 298 gcgaagaagtggttgtggaagaggcagagaagaaagatgaagaaaccgagaagaaaacag 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACGAAGAAGTGGTTGTGGAAGAGGCAGAGAAGAAAGATGAAGAAACCGAGAAGAAAACAG 356
Query 358 aggaggaagaagagaagacagagGTGATCACGGAAACTCCGGCAGTTGAGGAGGAGGAGA 417
||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 357 AGGAGAAAGACGAGAAGACAGAAGTGATCACGGAAACTCCGGTAGTTGAGGAGGAGGAGA 416
Query 418 AGAAAGCTGAGGAAGTGACAGAAACCCCGGCGATTGTGGAGGAAGAGAAGAAGACAGAGG 477
||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||
Sbjct 417 AGAAAGCTGAGGAAGTGACCGAAACTCCGGCGGTTGTGGAGGAGGAGAAGAAGACAGAGG 476
Query 478 CGGTGGAGGAGAAACCGACTGAAGTTGGGGCTGCTGAGGAAGTCGCCGTCGAGAAGGCCG 537
||| |||||||||| |||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 477 TGGTTGAGGAGAAACAGACTGAGGTTGCGGCTGCTGAGGAAGTCGCCGTTGAGAAGGCCG 536
Query 538 ATGAGTAAAGAGGAAGGAAGAAGCTATATATATGACCTCTTTTGGTCTCATATCGTTTTC 597
| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 537 AGGAGTAAAGAGGAAGGAAGAAGCTATATAT--GACCTTTTTTGGTCTCATATCGTTTTC 594
Query 598 TGTTTATTTTATTTTATCAACATTCCATAAGTATTTTCTATGTTTGTTGGGTTTGTTATG 657
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 595 TGTTTATTTTATTTTATCAACATTTCATAAGTATTTTCTATGTTTGTTGGGTTTGTTATG 654
Query 658 ATGAAATCAGATGTTTGAATCTTTTAATGGGTGCTACATTGTTTAC 703
||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 655 ATGAAATCAGATGTTTGGATCTTTTAATGGTTGCTACATTGTTTAC 700
> AT3G59370.1 | Symbols: | Vacuolar calcium-binding protein-related
| chr3:21941865-21942571 REVERSE LENGTH=522
Length=522
Score = 287 bits (155), Expect = 1e-76
Identities = 243/282 (86%), Gaps = 20/282 (7%)
Strand=Plus/Plus
Query 345 gagaaga-aaacagaggaggaagaagagaagacag-agGTGATCACGGAAACTCCGGCAG 402
||||||| ||| ||||| |||||||||||| ||| | |||||||| |||||||| |||
Sbjct 139 GAGAAGACAAA-TGAGGATGAAGAAGAGAAGGCAGCA-GTGATCACTGAAACTCCAACAG 196
Query 403 TTGAGGAGGAGGAGAAGAAAGCTGAGGAAGTGACAGAAACCCCGGCGATTGTGGAGGAAG 462
||| ||||||||||||||||||||| |||||||| |||| | | | ||| | |
Sbjct 197 TTGTGGAGGAGGAGAAGAAAGCTGAAGAAGTGACTGAAA-CTC--C------GGA-G--G 244
Query 463 AGAAGAAGACAGAGGCGGTGGAGGAGAAACCGACTGAAGTTGGGGCTGCTGAGGAAGTCG 522
|||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 245 AGAAGAAGACTGAGGCGTTGGAGGAGAAACAGACTGAAGTTGCGGCTGCTGAGGAAGTCG 304
Query 523 CCGTCGAGAAGGCCGATGAGTAAAGAGGAAGGAAGAAGCTATATAT-A-TGACCTCTTTT 580
|||||||||||||| | ||||||||||||||||||||||| ||||| | ||||| ||||
Sbjct 305 CCGTCGAGAAGGCCAAGGAGTAAAGAGGAAGGAAGAAGCTCTATATGACCGACCT-TTTT 363
Query 581 -GGTCTCATATCGTTTTCTGTTTATTTTATTTTATCAACATT 621
| |||||||||||||||||||||||||||||||||||||||
Sbjct 364 CGATCTCATATCGTTTTCTGTTTATTTTATTTTATCAACATT 405
Score = 95.3 bits (51), Expect = 7e-19
Identities = 62/67 (93%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 116 TTTTCATTTCGAAATGGCCACCGTTGAGGTTGAACAAGTGACTCCAGTAGCAGTAGAGAA 175
||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 28 TTTTC-CTTCGAAATGGCCACCGTTGAGGTTGAACACGTGACTTCAGTAGCAGTAGAGAT 86
Query 176 CGTTGAG 182
|||||||
Sbjct 87 CGTTGAG 93
> AT1G62480.1 | Symbols: | Vacuolar calcium-binding protein-related
| chr1:23128705-23129759 FORWARD LENGTH=764
Length=764
Score = 80.5 bits (43), Expect = 2e-14
Identities = 72/85 (85%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 123 TTCGAAATGGCCACCGTTGAGGTTGAACAAGTGACTCCAGTAGCAG-TAGAGAACGTTGA 181
||| ||||||||||| | |||||||||||||||||||||||||||| | |||||| | ||
Sbjct 90 TTC-AAATGGCCACCATCGAGGTTGAACAAGTGACTCCAGTAGCAGCT-GAGAACATCGA 147
Query 182 GGTACCA--AC-AAAGACAGTGGAG 203
||| ||| || |||| | ||||||
Sbjct 148 GGTGCCACCACCAAAGGCTGTGGAG 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5