BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471361
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12120.1 | Symbols: | Plant protein of unknown function (DU... 2196 0.0
> AT1G12120.1 | Symbols: | Plant protein of unknown function (DUF863)
| chr1:4114771-4117594 REVERSE LENGTH=1955
Length=1955
Score = 2196 bits (1189), Expect = 0.0
Identities = 1376/1468 (94%), Gaps = 6/1468 (0%)
Strand=Plus/Plus
Query 478 CTCACCTAAGCTGCTGGCGAAAGATATCGATCTTCGGCTTCCTGCAGATCACTACGCTTA 537
|||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 CTCACCTAAGCTTCTGAAGAAAGATATCGATCTTAGGCTTCCTGCAGATCACTACGCTTA 538
Query 538 TACTAACTTTCATGAGACACTTGGTTCTGGGAAATTTTACGGCACTGGTGGTTACCGAGA 597
||||||||||||||||||||||||||||| |||||||||| ||| |||| ||| ||||||
Sbjct 539 TACTAACTTTCATGAGACACTTGGTTCTGAGAAATTTTACAGCAATGGTAGTTCCCGAGA 598
Query 598 TACCGTAGAGATGAGATTTCATTCGGGGCACGATGCTAATAATGTGAAGGAAGCATCAGC 657
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 599 TACCGTAGAGATGAGATTTCATCCGGGGCACGAAGCTAATAATGTGAAGGAAGTATCAGC 658
Query 658 CACAAATTGGAGTGGCAAGAGAAATCCAAGAATTGTTATTGATCTTGAAGAACCTCCTCC 717
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CACAAGTTGGACTGGCAAGAGAAATCCAAGAATTGTTATTGATCTTGAAGAACCTCCTCC 718
Query 718 CAC-TGGGGTCTCCCATAGAGAGACTACAGAGCATGCTGC-GGCTTCTGTTAGCTATGTT 775
||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 719 CACAT-GGGTCTCCCATAGAGAGACTACAGAGCATGCT-CAGGCTTCTGTTAGCTATGTT 776
Query 776 ACTGTGAGAAATCCTGAAACAAAACCGTCATTCTTTGATCGGATCAGCTCAAACATTCTG 835
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 777 ACTGTGAGAAATCCTGACACAAAACCGTCGTTCTTTGATCGGATCAGCTCAAACATTCTG 836
Query 836 AAGG-TGGTGGATCAATCTCTCGTTGAGTATGATAGTGATAAAACGACTAGCAAGGAGCC 894
| || | || || ||||| ||||||||| ||||||||||||| || ||||| |||||| |
Sbjct 837 ATGGAT-GTAGACCAATCACTCGTTGAGGATGATAGTGATAAGACAACTAGTAAGGAGTC 895
Query 895 AAGTTTACTGGATCTTAATAGTACCCCGGTTGATGAGTCTGTTTCCGAACCTCATTATTG 954
||||||||||||||||||||| || ||||||||||||||||||||||| |||| ||| |
Sbjct 896 AAGTTTACTGGATCTTAATAGCACACCGGTTGATGAGTCTGTTTCCGAGCCTCGTTACTC 955
Query 955 TTTTTTACAAGATCTGAACTGTCCATACATCGAGGAGGAGACAGAAACGAGCTGTGAGAA 1014
| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 956 TCTCTTACAAGATCTGAACTGTGCATACATCGAGGAGGAGACAGAAACGAGCTACGAGAA 1015
Query 1015 GAGTGGAATAGATGATGGTCCTACACCGCTTTGCTCTCCTCAATGCCAAAATGTTCATGA 1074
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1016 GAGTGGAATAGATGATGGTTCTACACCGCTTTGCTCTCCTCAATGCCAAAATGTCCATGA 1075
Query 1075 AAAAGACGGCACAGCATCTCCAGCTTCGTATACTTCTTGCTGCACCACTGAAAACAACTC 1134
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 AAAAGACGGCACAGCATCTCCAGCTTCGGATACTTCTTGCTGCACCACTGAAAACAACTC 1135
Query 1135 GAGGACAGAGTCAAGAAGAAGTTCTTCTCCTCGAGCACTGGAGCCTTCTTGCCGTACCCG 1194
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1136 GAGGATTGAGTCAAGAAGAAGTTCTTCTCCTCGAGCACTGCAGCCTTCTTGCCGTACCCG 1195
Query 1195 GCTTGAGTTTACCAACACAGAAGACTTACTGGAGGAGAATGGATGTTGTAACGAGGAGGA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCTTGAGTTTACCAACACAGAAGACTTACTGGAGGAGAATGGATGTTGTAACGAGGAGGA 1255
Query 1255 AGATTCGTCTGAAGTGATTCAAATGGCAGCTGAATCATTAGTCCACATATCGGAGATTTC 1314
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1256 TGATTCGTCTGAAGTGATTCAAATGGCAGCTGAGTCATTAGTCCACATATCGGAGATATC 1315
Query 1315 ATATCAAAATCAAGACTTGCAATCAAAGCTTGTGTCAAAAATCAACAGCTCATCTCAAGA 1374
|||||||| ||||||||||||||||||||||||| || || ||||||||||||| ||||
Sbjct 1316 GTATCAAAACCAAGACTTGCAATCAAAGCTTGTGTTAAGAACCAACAGCTCATCTGAAGA 1375
Query 1375 TCAAGACTTTCCAGATAAACCCGAGATGGGTAAAGCGGAACCGGGATGTTCCTGCGATTC 1434
|||||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 1376 TCAAGATTTTCCAGATAAACCGGAGATGGGTAAAGCGAAACCGGGATGTTCCTACGATTC 1435
Query 1435 ATATGAGCGACACACATTAGGAATAAGAGAAACTAACACTGAAGAAGACTTTTGTGTGTC 1494
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1436 ATATGAGCGACACACGTTAGGAATAAGCGAAACCAACACTGAAGAAGACTTCTGTGTGTC 1495
Query 1495 ATCAATGGCTCGAGATGAGCTGAATAACATCACAAGAGATAACAACAAAGAGATTGGACT 1554
||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1496 ATCAATGGCTCTAGATGAACTTAATAACATCACAAGAGATAATAACAAAGAGATTGGACT 1555
Query 1555 CAAGCTGAGAAGAGGGAGAAGAATGAAGAACTTCCAAAAAGAGATACTCCCGAGCTTAAC 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CAAGCTGAGAAGAGGGAGAAGAATGAAGAACTTCCAAAAAGAGATACTCCCGAGCTTAAC 1615
Query 1615 GTCGCTCTCTAGACACGAGATCCGAGAAGACATTAACATCTTGGAAGCAGTTTTGAGATC 1674
|||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1616 GTCGCTTTCTAGACATGAGATCCGGGAAGACATGAACATCTTGGAAGCAGTTTTGAGATC 1675
Query 1675 AAGAGAGTACAAGAAGTTGCAGGGAAAGACGAAAGATGTCAAATTCAGAGCAAACCCAAG 1734
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1676 AAGAGAGTACAAGAAGATGCAGGGAAAGACGAAAGATGTCAAATTCAAAGCAAACCCAAG 1735
Query 1735 AAACAAACGTTCAGCGCCGCAGAGGTGCGTTGGTAAAAGAAAGCGAAAATCCGAGTGATA 1794
||||||||||||| | || || || |||||||||||||||| ||||||| |||| |||||
Sbjct 1736 AAACAAACGTTCACCACCACAAAGATGCGTTGGTAAAAGAAGGCGAAAAACCGAATGATA 1795
Query 1795 TCGATACCTTCCCGGATTCAGATTCTTTCATACAATTGCTTCATCATGTAATCTTATAAC 1854
|||||||||| |||| ||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1796 TCGATACCTTGCCGGTTTCTGATTCTTTCATACATTTGCTTCATCATGTAATCTTGTAAC 1855
Query 1855 AGTCTTTGTTTTCGATTTATTTGTTTTAACCTATGACATTGATTATGATAAGAGGAAAGG 1914
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1856 AGTCTTTGTTTTCGATTTATTTGTTTTAACTTATGACATTGATTATGATAAGAGGAAAGG 1915
Query 1915 CTAGTGAGACGATGACATTCATTTTCTC 1942
||||||||||||| | | ||||||||||
Sbjct 1916 CTAGTGAGACGATTATAATCATTTTCTC 1943
Score = 592 bits (320), Expect = 6e-168
Identities = 422/466 (91%), Gaps = 28/466 (6%)
Strand=Plus/Plus
Query 1 TTTCTGAGATTTGAGAGAGtctcctctctctctctctcGCTCTATCGCTCCTCATGATCC 60
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 25 TTTCTGAGATTTGAGAGAGTCTCCTCTCTCT-TCTCTCTCTATATCGCTCCTCATGATCC 83
Query 61 GA--TTTT-TAT-ATTTATAAAAAATTTATGTGATAATTACAGATACACGTTATTTGTGT 116
|| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GATTTTTTATATAATTTATAAAAAATTTATGTGATAATTACAGATACACGTTATTTGTGT 143
Query 117 GTATATTGATGGAGACAATAACCATTGGAATCTGACCATGGATCTCTTTTCTTCTTGAGA 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GTATATTGATAGAGACAATAACCATTGGAATCTGACCATGGATCTCTTTTCTTCTTGAGA 203
Query 177 TAttttt--ttt-t--CTCCTGTTCTCGTCTCCCCCAGATCTGTTC--C--TC---C-AT 223
||||||| ||| | |||||||||||||||||| |||||||||| | || | ||
Sbjct 204 TATTTTTCATTTCTTTCTCCTGTTCTCGTCTCCC--AGATCTGTTCGTCAATCTTACCAT 261
Query 224 TGGAAAGCTTCAAGCTT--TTTTATTCTCTCTCTATAGGGACGGGACCATTGTATAAAAG 281
||||||||||||||||| |||| |||||| ||| ||||||||||| |||||||||||
Sbjct 262 TGGAAAGCTTCAAGCTTCCTTTTTTTCTCTATCTG--GGGACGGGACCGTTGTATAAAAG 319
Query 282 AGTTAGTTAGACCAGACGGCCGCACGATGTATTTCTTCGGTTTGTCCAAAGAAGAAGTGT 341
|||||| | ||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 320 AGTTAG--A--CCAGACGACGGCACAATGTATTTCTTCGGTTTGTCCAAAGAAGAAGTGT 375
Query 342 TGTCACAGAAACATGTTGTATCATATAAAGAGACGTCTAAGCAGAATCCATTCAATATGG 401
|||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 376 TGTCACAGAAACATGTTGTATCATATAAAGAGACTTCTAAGCAGAACCCAATCAATATGG 435
Query 402 TCACTCTGTTTGGGAGACAGGTGTATCAGGTGAAAAGCGAGAGCTC 447
||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 436 TCACTCTGTTTGGCAGACAGGTGTATCAGGTAAAAAGTGAGAGCTC 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96184244220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5