BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471367 Length=1041 Score E Sequences producing significant alignments: (Bits) Value AT1G12170.1 | Symbols: | F-box family protein | chr1:4128607-4... 771 0.0 > AT1G12170.1 | Symbols: | F-box family protein | chr1:4128607-4129701 REVERSE LENGTH=1095 Length=1095 Score = 771 bits (417), Expect = 0.0 Identities = 541/600 (90%), Gaps = 12/600 (2%) Strand=Plus/Plus Query 451 CCAGTATACCGAAGAGTTGATATCTACAAGTTAGAAACTAATGTGTGGAAGAGTATTAAT 510 ||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||||| ||| Sbjct 499 CCATTATACCGAAGTGTTGAAATCTACACGTTCGAAACTAATGGGTGGAAGAGTATGAAT 558 Query 511 ACCTTTTCTAAAGCAGTAGAGATCCGCACATGT-AGTGATGTGTCTTTGAATGGAAATTT 569 ||||||||| ||| || |||||||||| ||| | |||||||||||||||||||||||||| Sbjct 559 ACCTTTTCTGAAGAAGGAGAGATCCGCCCAT-TAAGTGATGTGTCTTTGAATGGAAATTT 617 Query 570 GTATTGGGTTCTTACCAATCACGATACAGATGAGTATTTTATCGAAAGTTTCGATTTTTC 629 ||||||||| ||| |||| ||| ||| |||||| |||||||||||||||||||||||| Sbjct 618 ATATTGGGTTGTTAGCAATGGCGAGACACATGAGTGTTTTATCGAAAGTTTCGATTTTTC 677 Query 630 GAAAGAGATATATAAAtttttttGCGCTCTACCGTGGGATTATAAATCTTTTGCTT-TTC 688 ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||| | | ||| Sbjct 678 GAAAGAGATATATAAATGTTTTTGCACTCTACCGTGGAATTATAATTCTTTC-CATGTTC 736 Query 689 CAGTCCTCTCAACTTTCAGGAAAAATCGACTTTCAGTGTTAAAAAGAATGA------CCG 742 |||||||||||||||| |||||| |||||||||||||||||||||||| || ||| Sbjct 737 CAGTCCTCTCAACTTTTAGGAAAGATCGACTTTCAGTGTTAAAAAGAAAGAGAATGGCCG 796 Query 743 CAACAAATAATACTGAGATTTGGGTGACAAAAGACAAGATTAATGACGATGGGGAGCATG 802 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 797 AAACAAATAATATTGAGATTTGGGTGACAAAAAACAAGATTAATGACGATGGGGAGCCTG 856 Query 803 TAGCGTGGATAAAGTTCATGACAGTTTCAGTACCTATTTCTAGTTACTCT-CGTCCAAGT 861 ||||||||||||||||||||||||||||| || ||||||||||| ||||| | ||||||| Sbjct 857 TAGCGTGGATAAAGTTCATGACAGTTTCAATAGCTATTTCTAGTAACTCTTC-TCCAAGT 915 Query 862 TACTTCATCGATAATGTCTACCAAAAGAGCCTTATCATGTGTTGTGAGGATGAAAATAGC 921 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 916 TTCTTCATCGATAATGTCTACCAAAAGAGTTTTATCATGTGTTGTGAGGATGAAAATAAC 975 Query 922 AAGCTTTGCATTTATATTGTGAGGGGTAATGCGCTGACGAAGACTCAAATTATAGGTGTT 981 ||||||||| |||||||||||||||| |||||| ||||||||| ||||||| |||||||| Sbjct 976 AAGCTTTGCGTTTATATTGTGAGGGGCAATGCGTTGACGAAGATTCAAATTGTAGGTGTT 1035 Query 982 GATGCTAAACATTTTATTAATTATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1041 ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1036 GATGCTAAAAATTATATTAATCATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1095 Score = 590 bits (319), Expect = 1e-167 Identities = 363/384 (95%), Gaps = 4/384 (1%) Strand=Plus/Plus Query 1 ATGATGCATGTAATCCTTCCGTGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGCATGTAATCCTTCCATGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60 Query 61 CTATCTTTAATCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTATCTCTAACCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120 Query 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAATTCCTCTTATGGACCGATTCC 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAGTTCCTCTTATGGACCGATTCC 180 Query 181 AAGATGTATTCGGTAAGCGTCAATCTCAACAATGATCCAAAGATAGATATGCGTGAGTTA 240 ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| || Sbjct 181 AAGATGTATTCAGTAAGCGTCAATCTCAACGATGATCAAAAGATAGATATGCGTGAGCTA 240 Query 241 CCATTAGATATTTCTTATTTGAACAATTGTACGCGTACC-AGCTTTACTCCTTGTGATGG 299 || ||||||||| |||||||||| |||| || ||||||| | ||||||||||||||| || Sbjct 241 CCCTTAGATATTCCTTATTTGAATAATTTTATGCGTACCTA-CTTTACTCCTTGTGACGG 299 Query 300 CTTATTGTTTTGTGACTCGTGGTCATGG-GAAAATAAAGCTGCGGTTTGGAACCCGTGGT 358 |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 300 CTTATTGTTTTGTGACTCGTGGTCATGGAGAAAG-AAAGCTGCGATTTGGAACCCGTGGT 358 Query 359 TGAGACAAACTAAATGGATAAAGT 382 |||||||||||||||||||| ||| Sbjct 359 TGAGACAAACTAAATGGATAGAGT 382 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51037893352 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5