BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471367
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12170.1 | Symbols: | F-box family protein | chr1:4128607-4... 771 0.0
> AT1G12170.1 | Symbols: | F-box family protein | chr1:4128607-4129701
REVERSE LENGTH=1095
Length=1095
Score = 771 bits (417), Expect = 0.0
Identities = 541/600 (90%), Gaps = 12/600 (2%)
Strand=Plus/Plus
Query 451 CCAGTATACCGAAGAGTTGATATCTACAAGTTAGAAACTAATGTGTGGAAGAGTATTAAT 510
||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||||| |||
Sbjct 499 CCATTATACCGAAGTGTTGAAATCTACACGTTCGAAACTAATGGGTGGAAGAGTATGAAT 558
Query 511 ACCTTTTCTAAAGCAGTAGAGATCCGCACATGT-AGTGATGTGTCTTTGAATGGAAATTT 569
||||||||| ||| || |||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 559 ACCTTTTCTGAAGAAGGAGAGATCCGCCCAT-TAAGTGATGTGTCTTTGAATGGAAATTT 617
Query 570 GTATTGGGTTCTTACCAATCACGATACAGATGAGTATTTTATCGAAAGTTTCGATTTTTC 629
||||||||| ||| |||| ||| ||| |||||| ||||||||||||||||||||||||
Sbjct 618 ATATTGGGTTGTTAGCAATGGCGAGACACATGAGTGTTTTATCGAAAGTTTCGATTTTTC 677
Query 630 GAAAGAGATATATAAAtttttttGCGCTCTACCGTGGGATTATAAATCTTTTGCTT-TTC 688
||||||||||||||||| ||||||| ||||||||||| ||||||| ||||| | | |||
Sbjct 678 GAAAGAGATATATAAATGTTTTTGCACTCTACCGTGGAATTATAATTCTTTC-CATGTTC 736
Query 689 CAGTCCTCTCAACTTTCAGGAAAAATCGACTTTCAGTGTTAAAAAGAATGA------CCG 742
|||||||||||||||| |||||| |||||||||||||||||||||||| || |||
Sbjct 737 CAGTCCTCTCAACTTTTAGGAAAGATCGACTTTCAGTGTTAAAAAGAAAGAGAATGGCCG 796
Query 743 CAACAAATAATACTGAGATTTGGGTGACAAAAGACAAGATTAATGACGATGGGGAGCATG 802
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 797 AAACAAATAATATTGAGATTTGGGTGACAAAAAACAAGATTAATGACGATGGGGAGCCTG 856
Query 803 TAGCGTGGATAAAGTTCATGACAGTTTCAGTACCTATTTCTAGTTACTCT-CGTCCAAGT 861
||||||||||||||||||||||||||||| || ||||||||||| ||||| | |||||||
Sbjct 857 TAGCGTGGATAAAGTTCATGACAGTTTCAATAGCTATTTCTAGTAACTCTTC-TCCAAGT 915
Query 862 TACTTCATCGATAATGTCTACCAAAAGAGCCTTATCATGTGTTGTGAGGATGAAAATAGC 921
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 916 TTCTTCATCGATAATGTCTACCAAAAGAGTTTTATCATGTGTTGTGAGGATGAAAATAAC 975
Query 922 AAGCTTTGCATTTATATTGTGAGGGGTAATGCGCTGACGAAGACTCAAATTATAGGTGTT 981
||||||||| |||||||||||||||| |||||| ||||||||| ||||||| ||||||||
Sbjct 976 AAGCTTTGCGTTTATATTGTGAGGGGCAATGCGTTGACGAAGATTCAAATTGTAGGTGTT 1035
Query 982 GATGCTAAACATTTTATTAATTATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1041
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GATGCTAAAAATTATATTAATCATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1095
Score = 590 bits (319), Expect = 1e-167
Identities = 363/384 (95%), Gaps = 4/384 (1%)
Strand=Plus/Plus
Query 1 ATGATGCATGTAATCCTTCCGTGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGCATGTAATCCTTCCATGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60
Query 61 CTATCTTTAATCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTATCTCTAACCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120
Query 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAATTCCTCTTATGGACCGATTCC 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAGTTCCTCTTATGGACCGATTCC 180
Query 181 AAGATGTATTCGGTAAGCGTCAATCTCAACAATGATCCAAAGATAGATATGCGTGAGTTA 240
||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 181 AAGATGTATTCAGTAAGCGTCAATCTCAACGATGATCAAAAGATAGATATGCGTGAGCTA 240
Query 241 CCATTAGATATTTCTTATTTGAACAATTGTACGCGTACC-AGCTTTACTCCTTGTGATGG 299
|| ||||||||| |||||||||| |||| || ||||||| | ||||||||||||||| ||
Sbjct 241 CCCTTAGATATTCCTTATTTGAATAATTTTATGCGTACCTA-CTTTACTCCTTGTGACGG 299
Query 300 CTTATTGTTTTGTGACTCGTGGTCATGG-GAAAATAAAGCTGCGGTTTGGAACCCGTGGT 358
|||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 300 CTTATTGTTTTGTGACTCGTGGTCATGGAGAAAG-AAAGCTGCGATTTGGAACCCGTGGT 358
Query 359 TGAGACAAACTAAATGGATAAAGT 382
|||||||||||||||||||| |||
Sbjct 359 TGAGACAAACTAAATGGATAGAGT 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5