BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471368 Length=1113 Score E Sequences producing significant alignments: (Bits) Value AT1G12190.1 | Symbols: | F-box and associated interaction doma... 1543 0.0 > AT1G12190.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:4132967-4134094 REVERSE LENGTH=1128 Length=1128 Score = 1543 bits (835), Expect = 0.0 Identities = 1022/1112 (92%), Gaps = 14/1112 (1%) Strand=Plus/Plus Query 1 ATGGCATGTATG-AATATTCCGGGGGAATTGGTGGAAGATATACTCTACCGTGTTCCATC 59 ||||| ||| || ||| ||||| |||||||| ||||||| |||||||| ||||||||||| Sbjct 1 ATGGCGTGTGTGAAAT-TTCCGTGGGAATTGATGGAAGAGATACTCTATCGTGTTCCATC 59 Query 60 TCCATCTATTTCCCGATTCAAAACCGTTTCCAAGGAATGGAACACACTTCTCAACGATAA 119 || |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 60 TCTATCTCTTTCCCGATTCAAAACTGTTTCCAAAGAATGGAACACACTTCTCAACGATAA 119 Query 120 GGCGTTCATCAAGAAACACTTGACTCTCATCCGTCCTCAGTTCCTTTTATGGACCAATTC 179 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct 120 GACGTTCATCAAGAAACACTTGGCTCTCGTCCGTCCTCAATTCCGTTTATGGACCAATTC 179 Query 180 CAAGGTTTATTCGGTAGGTGTGAGTCTTAACGATGATCCAAAAATAGAGCTGCGTGAGTT 239 ||||||||||||||| | ||| ||||| |||||||||||||| |||||||||||||| || Sbjct 180 CAAGGTTTATTCGGTTGATGTCAGTCTAAACGATGATCCAAATATAGAGCTGCGTGAATT 239 Query 240 GCTCTTAGATATACCTGATGTAATTGATCATAGGACTACAAACTTTCTTCCTTGCAATGA 299 || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GCCCTTAGATATTCCTTATGTAATTGATCATAGGACTACAAACTTTCTTCCTTGCAATGA 299 Query 300 CTTATTGTTTTGTGCCTCATGGTGGTGGAACAATAAAGCCGCTGTTTGGAACCCGTCATT 359 ||||||||||||||||||||||||| | ||||||||| | ||||||||||||||| || Sbjct 300 CTTATTGTTTTGTGCCTCATGGTGGAG---CAATAAAGCTGTTGTTTGGAACCCGTCGTT 356 Query 360 GAGACAAACTAGATTGATCAAGTCGGGGGAAGAACATTTCAGGTTTGGTGGCATAGGATA 419 |||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| Sbjct 357 GAGACAAACTAGATTGATTAAATCGGGGGAAGAACATTTCCGGTTTGGTGGCATAGGATA 416 Query 420 CGATAATGGTAGACACGGAAAAGGGTACCATATATTTGGACATAGTCATAGTTGGCTAAG 479 |||| |||||||| ||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct 417 TGATAGTGGTAGACCCGGAAAAGGTTACCATATATTTGGGCATAGTCATAGTCGGCTAAG 476 Query 480 TGTTAATGGTAACACCTCTAAGTTTAATAAAAGATTTTCTATCTCCAAGTTTGAAAGCAA 539 ||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||| || Sbjct 477 TGTTAATGGAAACACCTCTAAGTTTATTAAAAGATTTTATATCACCAAGTTTGAAAGTAA 536 Query 540 TGCGTGGAAATGTATTAATGATGTTTCCGATGGAGAGAATTCCATAGGAGGAGATTCATT 599 |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 537 TGCGTGGAAATGTATTGATGATGTTTCCCTTGGAGAGAATTCCATAGGAGGAGATTCATT 596 Query 600 AGACAATAAT---GTATCTTTGAATGGAAATTTGTATTGGACTACTTATAGCTATGAGAC 656 ||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 597 AGATAATAATAATGTATCTTTGAATGGAAATTTGTATTGGACTACTAATAGCTATGATAC 656 Query 657 TGATGAATATCTCATCCGAAGTTTTGATTTTTCCAAAGAGATATTCAAAATCTTTTGCGT 716 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 657 TGATGAATATCTCATCCAAAGTTTCGATTTTTCCAAAGAGATATTCAAAATCTTTTGCGT 716 Query 717 TCTACCGTGGAAGAAGGATTCTTCTGATATTCCAATCCTCTCAGTTTTTAGGGGAGATCG 776 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 717 TCTACCAAGGAAGAAGGATTCTTCTGATATTCCAGTCCTCTCAGTTTTTAGGGGAGATCG 776 Query 777 ACTTTCAGTATTAAATAAATCTAAAGGAACAAATAACATGGAGATTTGGGTGACAAAGAA 836 |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 777 ACTTTCGGTATTACATAAATTTAAAGGAACAAATAACATGGAGATTTGGGTGACAAAGAA 836 Query 837 CAAGATTAATGAG-GATGTGAAGAAT-T-TGGTGTGGAAGATGTTCATGACTGTTTCAAT 893 ||||||||||||| | ||| || || | ||||||||| |||||||||||| |||||||| Sbjct 837 CAAGATTAATGAGAG-TGT-AA-AAGCTGTGGTGTGGATGATGTTCATGACAGTTTCAAT 893 Query 894 ACCGATTTACAAGGGCTCTAATCCAAGTTACTTCATCAATGATATCTACGAAAAGAGACT 953 ||| || || |||| |||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 894 ACCTATATATAAGGACTCTAAGCCAAGTTACTTTATCAATGATATCTACGAAAAGAGACT 953 Query 954 CGTCATGTTTTGTAGTGACGAAAATGGAAAGGCTTGCGTTTATATTGCGAAGGGCCATGC 1013 |||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||| || Sbjct 954 CGTCATGTGTTGCAGTGACGAAAATGGAAAGGCTTGCGTTTATATTGTGAAGGACCAAGC 1013 Query 1014 AAGGAAAAAGATTCAAATAGGTTTTGATGTTAGTGAGTTTAGTCATTGTTTCTATGATCC 1073 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1014 AAGGAAAAAGATTCAACTAGGTTTTCATGTTAGTGAGTTTAGTCATTGTTTCTATGATCC 1073 Query 1074 CAATTTGTTTCCTATTCCTTCAGAGAGTTCAG 1105 || ||| |||||||||||||||||| ||||| Sbjct 1074 CAGCTTGATTCCTATTCCTTCAGAGACTTCAG 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54567992415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5