BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471368
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12190.1 | Symbols: | F-box and associated interaction doma... 1543 0.0
> AT1G12190.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:4132967-4134094 REVERSE LENGTH=1128
Length=1128
Score = 1543 bits (835), Expect = 0.0
Identities = 1022/1112 (92%), Gaps = 14/1112 (1%)
Strand=Plus/Plus
Query 1 ATGGCATGTATG-AATATTCCGGGGGAATTGGTGGAAGATATACTCTACCGTGTTCCATC 59
||||| ||| || ||| ||||| |||||||| ||||||| |||||||| |||||||||||
Sbjct 1 ATGGCGTGTGTGAAAT-TTCCGTGGGAATTGATGGAAGAGATACTCTATCGTGTTCCATC 59
Query 60 TCCATCTATTTCCCGATTCAAAACCGTTTCCAAGGAATGGAACACACTTCTCAACGATAA 119
|| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 60 TCTATCTCTTTCCCGATTCAAAACTGTTTCCAAAGAATGGAACACACTTCTCAACGATAA 119
Query 120 GGCGTTCATCAAGAAACACTTGACTCTCATCCGTCCTCAGTTCCTTTTATGGACCAATTC 179
| |||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||
Sbjct 120 GACGTTCATCAAGAAACACTTGGCTCTCGTCCGTCCTCAATTCCGTTTATGGACCAATTC 179
Query 180 CAAGGTTTATTCGGTAGGTGTGAGTCTTAACGATGATCCAAAAATAGAGCTGCGTGAGTT 239
||||||||||||||| | ||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 180 CAAGGTTTATTCGGTTGATGTCAGTCTAAACGATGATCCAAATATAGAGCTGCGTGAATT 239
Query 240 GCTCTTAGATATACCTGATGTAATTGATCATAGGACTACAAACTTTCTTCCTTGCAATGA 299
|| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCCCTTAGATATTCCTTATGTAATTGATCATAGGACTACAAACTTTCTTCCTTGCAATGA 299
Query 300 CTTATTGTTTTGTGCCTCATGGTGGTGGAACAATAAAGCCGCTGTTTGGAACCCGTCATT 359
||||||||||||||||||||||||| | ||||||||| | ||||||||||||||| ||
Sbjct 300 CTTATTGTTTTGTGCCTCATGGTGGAG---CAATAAAGCTGTTGTTTGGAACCCGTCGTT 356
Query 360 GAGACAAACTAGATTGATCAAGTCGGGGGAAGAACATTTCAGGTTTGGTGGCATAGGATA 419
|||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 357 GAGACAAACTAGATTGATTAAATCGGGGGAAGAACATTTCCGGTTTGGTGGCATAGGATA 416
Query 420 CGATAATGGTAGACACGGAAAAGGGTACCATATATTTGGACATAGTCATAGTTGGCTAAG 479
|||| |||||||| ||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 417 TGATAGTGGTAGACCCGGAAAAGGTTACCATATATTTGGGCATAGTCATAGTCGGCTAAG 476
Query 480 TGTTAATGGTAACACCTCTAAGTTTAATAAAAGATTTTCTATCTCCAAGTTTGAAAGCAA 539
||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||| ||
Sbjct 477 TGTTAATGGAAACACCTCTAAGTTTATTAAAAGATTTTATATCACCAAGTTTGAAAGTAA 536
Query 540 TGCGTGGAAATGTATTAATGATGTTTCCGATGGAGAGAATTCCATAGGAGGAGATTCATT 599
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 537 TGCGTGGAAATGTATTGATGATGTTTCCCTTGGAGAGAATTCCATAGGAGGAGATTCATT 596
Query 600 AGACAATAAT---GTATCTTTGAATGGAAATTTGTATTGGACTACTTATAGCTATGAGAC 656
||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 597 AGATAATAATAATGTATCTTTGAATGGAAATTTGTATTGGACTACTAATAGCTATGATAC 656
Query 657 TGATGAATATCTCATCCGAAGTTTTGATTTTTCCAAAGAGATATTCAAAATCTTTTGCGT 716
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 TGATGAATATCTCATCCAAAGTTTCGATTTTTCCAAAGAGATATTCAAAATCTTTTGCGT 716
Query 717 TCTACCGTGGAAGAAGGATTCTTCTGATATTCCAATCCTCTCAGTTTTTAGGGGAGATCG 776
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 TCTACCAAGGAAGAAGGATTCTTCTGATATTCCAGTCCTCTCAGTTTTTAGGGGAGATCG 776
Query 777 ACTTTCAGTATTAAATAAATCTAAAGGAACAAATAACATGGAGATTTGGGTGACAAAGAA 836
|||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACTTTCGGTATTACATAAATTTAAAGGAACAAATAACATGGAGATTTGGGTGACAAAGAA 836
Query 837 CAAGATTAATGAG-GATGTGAAGAAT-T-TGGTGTGGAAGATGTTCATGACTGTTTCAAT 893
||||||||||||| | ||| || || | ||||||||| |||||||||||| ||||||||
Sbjct 837 CAAGATTAATGAGAG-TGT-AA-AAGCTGTGGTGTGGATGATGTTCATGACAGTTTCAAT 893
Query 894 ACCGATTTACAAGGGCTCTAATCCAAGTTACTTCATCAATGATATCTACGAAAAGAGACT 953
||| || || |||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 894 ACCTATATATAAGGACTCTAAGCCAAGTTACTTTATCAATGATATCTACGAAAAGAGACT 953
Query 954 CGTCATGTTTTGTAGTGACGAAAATGGAAAGGCTTGCGTTTATATTGCGAAGGGCCATGC 1013
|||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 954 CGTCATGTGTTGCAGTGACGAAAATGGAAAGGCTTGCGTTTATATTGTGAAGGACCAAGC 1013
Query 1014 AAGGAAAAAGATTCAAATAGGTTTTGATGTTAGTGAGTTTAGTCATTGTTTCTATGATCC 1073
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1014 AAGGAAAAAGATTCAACTAGGTTTTCATGTTAGTGAGTTTAGTCATTGTTTCTATGATCC 1073
Query 1074 CAATTTGTTTCCTATTCCTTCAGAGAGTTCAG 1105
|| ||| |||||||||||||||||| |||||
Sbjct 1074 CAGCTTGATTCCTATTCCTTCAGAGACTTCAG 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5