BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471373
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12244.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1138 0.0
> AT1G12244.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:4157654-4159046 FORWARD
LENGTH=983
Length=983
Score = 1138 bits (616), Expect = 0.0
Identities = 690/726 (95%), Gaps = 3/726 (0%)
Strand=Plus/Plus
Query 1 ATGTGTTCTCTTCACTCTCTTTCTTCCGTAGCAATTTCATTCAGAACCCAAAAGTACGTA 60
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 117 ATGTGTTCTCTTCACTCTTTTTCTTCCGTAGCAATTTCATTCAGAACTCAAAAGTACGTA 176
Query 61 AATACCCCTCTCGTTCCTCGCTTATCTTCTATAGGATCTCGTAATTATCCTCTAGCGTTG 120
|||||| ||||||||| |||||||||| ||||||||| |||||||||||||||| || |
Sbjct 177 AATACCTCTCTCGTTCATCGCTTATCTCCTATAGGATATCGTAATTATCCTCTACCG-T- 234
Query 121 AGGGCAGCGACGTCAATTGATGAAATCCCTCCTAATGCCGTTCGCCGGAAAATAGACCGG 180
|||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 235 -GGGCAGTGACGTCAATTGACGAAATCCCTCCTAATGCTGTTCGCCGGAAAATAGACCGG 293
Query 181 AACTGGAGAGGTGGGTTCAGTCTCGGCGTAGATTTAGGTTTATCTCGAACCGGAATCGCT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AATTGGAGAGGTGGGTTCAGTCTCGGCGTAGATTTAGGTTTATCTCGAACCGGAATCGCT 353
Query 241 ATTAGTAAAGGCTACACCGTTAAACCTCTCACGGTTTTGAAATCTAGAGGACAAAAGCTC 300
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 354 ATTAGTAAAGGCTACACCGTTAAACCTCTCACGGTTTTGAAATCGAGAGGGCAAAAACTC 413
Query 301 GAGACCAGGCTATTAGAAATTGCTGAAGAAGAGGAGGTTGATGAATTCATAATTGGGTTG 360
||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 414 GAGACCAGGCTTTTAGAAATTGCTGAAGAAGAAGAGGCTGATGAATTTATAATTGGGTTG 473
Query 361 CCGAGATCTTCTGACGGGAAAGAGACGATTCAATCGAACAAAATCCGATCTGTTGCTGGA 420
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 474 CCGAGATCTTCTGATGGGAAAGAGACGATTCAATCGAACAAAATTCGTTCTGTTGCTGGA 533
Query 421 CGGCTCGCTGTTCAAGCCGCCGAGAGGGGTTGGAGGGTTTATGTATTTGATGAACATGGA 480
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 534 CGGCTCGCTATTCAAGCCGCCGAGAGGGGTTGGAGAGTTTATGTATTTGATGAACATGGA 593
Query 481 ACAACATCAGAAGCTTCAGACAGAATGATTGTAATGGGACTTAGTAAGAGTGAAAGACAG 540
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 594 ACAACGTCAGAAGCTTCAGATAGAATGATTGTAATGGGACTTAGCAAGAGTGAAAGACAG 653
Query 541 AACAGATCAGATGCTTACGCTGCTGTGATATTGTTGGAGAGGTATTTCTCTACACAAGGT 600
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AACAGATCAGATGCATATGCTGCTGTGATATTGTTGGAGAGGTATTTCTCTACACAAGGT 713
Query 601 TTAGGAGTTGAGATTATACTTCCCAAGAGTTTAGAGCTTCAAGCGAAGATCAAGAACGGT 660
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 714 TTAGGAATTGAGATTATACTTCCCAAGAGTTTAGAGCTTCAAGCAAAGATCAAGAACGGT 773
Query 661 GCACCTGTTGACCCCGACTTTAATCCGGAAAACCTCCAAGAGTATTACACATTCTAAAGT 720
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 774 GCACCTGTAGACCCCGACTTCAATCCGGAAAACCTCGAAGAGTATTACACATTCTAAAGT 833
Query 721 AGTTTG 726
||||||
Sbjct 834 AGTTTG 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5