BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471381
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12320.1 | Symbols: | Protein of unknown function (DUF1442)... 1240 0.0
> AT1G12320.1 | Symbols: | Protein of unknown function (DUF1442)
| chr1:4189355-4190342 FORWARD LENGTH=841
Length=841
Score = 1240 bits (671), Expect = 0.0
Identities = 795/852 (93%), Gaps = 19/852 (2%)
Strand=Plus/Plus
Query 1 aagaagcagaacccaagaaacgtgagaaa-gttgagaagaagaagaagaagaagaagaaa 59
|||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||
Sbjct 1 AAGAAGCAGAACACAAGAAACGTGAGAAACTTTGAGAAGACCAAGAAGAAGAAGCAGAAG 60
Query 60 aagaagaaaaTGAAATTGGTTTGGTCTCCTGAAACAGCATCAAAGGCTTATATAGACACC 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAGAAGAAAATGAAATTGGTTTGGTCTCCGGAAACAGCATCAAAGGCTTATATAGACACC 120
Query 120 GTTAAATCGTGCGAGAATCTTGAAACGCCGGACGCGGCGGAGCTAATAGCGGCGATGGCG 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTAAATCGTGTGAGAATCTTGAAACGCCGGACGCGGCGGAGCTAATAGCGGCGATGGCG 180
Query 180 GCTGGATGGAACGCGAAGCTGATCGTGGAAACTTGGTCAGAAGGAGACGCAATAGCTTCA 239
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGGGATGGAACGTGAAGCTGATCGTGGAAACTTGGTCAGAAGGAGACGCAATAGCTTCA 240
Query 240 AGTATTGGTTTAAACGTAGCGAGCCAACACGCAAACGCTAAACACATATGTATATTACAA 299
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 241 AGTATTGGTTTAAACGTAGCAAGCAAACACGCAAACGCTAAACACATATGTATAGTACAA 300
Query 300 AACTCGAGATCAGAATCTGCTTATCTCCAAGCTATTCAAGAATCTTCATCTCCTTTGAAC 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AACTCAAGATCAGAATCTGCTTATCTCCAAGCTATTCAAGAATCTTCATCTCCCTTGAAC 360
Query 360 TTACCAGAGACAATCATCGCTGAAGAGCCCGAAAAAGCGATGAAGAAGCTACAAGGAATC 419
|| |||||||| ||| |||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 361 TTTCCAGAGACTATCGTCGCTGAAGAACCCGGAAAAGCGATGAAGAAGCTACAAGGAGTC 420
Query 420 GATTTCTTGGTCGTGGATTGGCGGAACAAAGAATTTGCAGCTGCTACGTTGAAGAACGCT 479
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 421 GACTTCTTGGTCGTGGATTGGCGGAACAAAGAATTTGCAGCGGCTGCGTTGAAAAACGCT 480
Query 480 GCGTTTGGAAGCAGAGGAGCGGTTGTGGTTTGTAGAAACGGGTATTCGAGTTTGAGAAGG 539
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GCGTTTGGAAACAGAGGAGCTGTTGTGGTTTGTAGAAACGGGTATTCGAGCTTGAGAAGG 540
Query 540 GTTTTAAGAGATCGGAAAGTTGTTAGAACGGTGACTCTTCCGGTCACCGGAGGTATTGAG 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTTTAAGAGACCGGAAAGTTGTTAGAACGGTGACTCTTCCGGTCACCGGAGGTATTGAG 600
Query 600 ATTGCTCATGTCGCGGCTAGGAGCTCAGGGAAGAGTGAGAAGAGTAATAAGAGAAGATGG 659
|| |||||||| |||||||||| |||||||||||||| | | | |||||||||||||||
Sbjct 601 ATAGCTCATGTTGCGGCTAGGAACTCAGGGAAGAGTG-GTA-AC-AATAAGAGAAGATGG 657
Query 660 ATCACACATGTTGATCAGAGATCAGGAGAAGAACATGTGTTTAGTATCTAGAAAGTAAGA 719
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 658 ATCACACATGTTGATCAGAGATCAGGAGAGGAACATGTGTTTAGTATCTAGAAAGTCAGA 717
Query 720 GACAAATACAATTTGTCATAAGCGTTTGTTTATTGGATCTTGTATTTGTTGTATTTGTAC 779
|||||||| |||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 718 GACAAATA------GTCATAAG--T--GTTTATTGGATCTTGTATTTGTTGTGTTTGTAC 767
Query 780 ATAAGAT--T-CCAT-AGATGCAATTGTTATTGAA-AAAACATGCTTGTCTTATAAATGT 834
||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 768 ATAAGATGATTCCATCAGATGCAATTGTTATTGAAGAAAACATGCTTGTCTTATAAATGT 827
Query 835 GATCGTTGTGTT 846
|||| |||||||
Sbjct 828 GATCTTTGTGTT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5