BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471382
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12330.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2691 0.0
> AT1G12330.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1);
Has 249 Blast hits to 249 proteins in 27
species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14;
Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI
BLink). | chr1:4194658-4196749 FORWARD LENGTH=1655
Length=1655
Score = 2691 bits (1457), Expect = 0.0
Identities = 1587/1650 (96%), Gaps = 7/1650 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaTGGCTCCTTCGTCTTCATCTTCTCCTTCCAAATCTCCTGTTCCATCTCTTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 AAAAAAAATGGCTCCTTCGTCTTCATCTTCTCCTTCCAAATCTCCTGTTCCATCTCTTCA 68
Query 61 CCAATCCCTTCACTTCACTCCTATTCTAGAATGTGAAGAAGACGACCTCCAAGAAGAAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CCAATCCCTTCACTTCACTCCTATTCTAGAATGTGAAGAAGACGACCTCCAAGAAGAAAG 128
Query 121 ATACAAAAACAGAGCAACACCAAGCAGCGACGGTGGTTCTTCCGccacaccaaaccacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 ATACAAAAACAGAGCAACACCAAGCAGCGACGGTGGTTCTTCCGCCACACCAAACCACCA 188
Query 181 ccaccaccgccgcaacaacagcaacaaccacca--a-cacactctaacacctctccacca 237
||||||||||| | ||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 189 GCACCACCGCCGTACCAACAGCAACAACAACCACCAGCACACTCTAACACCTCTCCACCA 248
Query 238 caacggaaaaccccaaaccaGAAAACGACATGACGACAACGACGAAGACGACGGTGGTGC 297
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 249 CAACGGCAAACCCCAAACCAGAAAACGACATGACGACAACGACGAAGACGATGGTGGTGC 308
Query 298 CGTCTCCTGCAACAAGTGTCGGCCTCACCACTCTCACCGTGACAAATTCTCCGTCGTACC 357
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 309 CGTATCCTGCAACAAGTGTCGACCTCACCACTCTCACCGTGACAAATTCTCCGTCGTACC 368
Query 358 TCTCGAAAGCCACAACAACCCTTCTTTCATCTCTAGCCCCAATCTCATAATCAAATCCAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TCTCGAAAGCCACAACAACCCTTCTTTCATCTCTAGCCCCAATCTCATAATCAAATCCAT 428
Query 418 CTTTCAATCTCTCACACGGAGAAGTCCCAAACCTTCCTCTGCGACGGCGGCGCTTCCACC 477
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 429 CTTCCAATCTCTCACACGGAGAAGCCCCAAACCTTCCTCTGCAACGGCGGCGCTTCCACC 488
Query 478 GCGCTCTTCCTCCTCCTCCGCCGCAGATGCTTCAAGAGAAGAGCAGTGGCGGTTAGCTGT 537
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 489 GCGCTCTTCCTCATCCTCCGCCGCAGATGCTTCTAGAGAAGAACAGTGGCGGTTAGCTGT 548
Query 538 GGCGGAGCTTTCTCATAAACTGATTCAAGCCACGAAGAAGAAAGAAGACGCGGTCATAGA 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 549 GGCGGAGCTTTCTCATAAACTGATTCAAGCCACGAAGAAGAAAGAAGACGCGGTTATAGA 608
Query 598 AGCTTCTAGGTTGAAATCATCCATGGCAGAGCTTGAGAAGAAACTCAATAAACTCGAGAT 657
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 609 AGCTTCTAGGTTGAAATCATCCATGGCAGAGCTAGAGAAGAAACTCAATAAACTCGAGAT 668
Query 658 TTACTGTCACAATCTCAAATCAGGTCTTGACGAATGCAGCAACAAGAAACAGAGTGTTAC 717
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 669 TTACTGTCACAATCTCAAATCAGGTCTCGACGAATGCAGCAACAAAAAACAGAGTGTTCC 728
Query 718 GATTCGAAAAGACGGATTCAACGACAGGATCATTCAGCAATTTCTCGTTTCTGTGTCGGA 777
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 729 GATTCGAAAAGACGGATTCAACGACAGGATCATTCAGCAGTTTCTCGTCTCTGTGTCGGA 788
Query 778 ATCTCGATCTTCGATCAGAGCTTTGAGTAGATCTCTCGCGTCGCAGCTACGAACCGTCGG 837
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 789 ATCTCGTTCTTCGATCAGAGCTTTAAGTAGATCTCTCGCCTCGCAGCTACGAACCGTCGG 848
Query 838 TGGCAAAGTTTACGAGAGACTCTCTCTTCTTCTTCAACCATTCGATGTAAAGATCAACTC 897
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 849 TGGCAAAGTTTACGAGAGACTCTCTCTTCTTCTTCAACCTTTCGATGTAAAGATCAACTC 908
Query 898 TTTCGCGAAAAACCCTAAAAGTTTGATCTTTTACCTCGAAGCGATTCTGAGTAGAGCTTT 957
||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 909 TTTTGCCAAAAACCCTAAAAGTCTGATCTTTTACCTCGAAGCGATTCTGAGCAGAGCCTT 968
Query 958 CTTCGAGGATTTCGAAGCTTCTGGGTTTCAGAAGAATGGGTCGACCCGGATTTTGAATCC 1017
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 969 CTTCGAGGATTTCGAAGCTCCTGGGTTTCAGAAAAACGGGTCGACCCGGATTTTGAATCC 1028
Query 1018 GATTGATCGTTGTGAATCCAATTACGCTTCGTTTAACGTCTTGATGGAGCTAACGTGGGA 1077
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1029 AATTGATCGTTGTGAATCCAATTACGCTTCGTTTAACGTCTTGATGGAGCTGACGTGGGA 1088
Query 1078 TGAGGTGTTGAGCAGAGGAACGAAGCATTTCTCGGAGGAGTTTAGCCGATTCTGTGACCG 1137
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1089 TGAGGTGTTGAGCAGAGGAACGAAGCATTTCTCGGAGGAGTTTAGCCGTTTCTGTGACCG 1148
Query 1138 GAAAATGAGTGACGTCGTTTCGATGCTTAGCTGGAACAGAGCCTGGCCTGAACCGCTTTT 1197
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1149 GAAGATGAGTGACGTCGTTTCGATGCTTAGCTGGAACCGTGCCTGGCCTGAACCGCTTTT 1208
Query 1198 ACAGGCTTTCTTTGGTGCGTCGAAGAGTGTTTGGTTGGTTCATCTTTTGGCTAATTCGGT 1257
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1209 ACAGGCTTTCTTTGGTGCGTCAAAGAGTGTTTGGTTGGTTCATCTTTTGGCTAATTCAGT 1268
Query 1258 GAACCCGGGTTTGCAAATCTTTCGCGTGGAGAAAGATGACCGGTTTGATCCGATTTACAT 1317
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1269 GAACCCGGGGTTGCAAATCTTTCGTGTGGAGAAAGATGACCGGTTTGATCCGATTTACAT 1328
Query 1318 GGAGGAAACTGGTGGAGAACGGTTCAAGAGTCTGGTTAGAGCTATGGTTCAACCCGGGTT 1377
||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1329 GGAGGAAACCGGTGGGGAACGGTTTAAGAGTCTGGTTAGAGCTATGGTTCAGCCCGGGTT 1388
Query 1378 TTACGTCTATGGAAGTGTGGTTAAGTGCAAGGTGGTTTGCAAGCAATGCGGCAGCGATGA 1437
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 TTATGTCTATGGGAGTGTGGTTAAGTGCAAGGTGGTTTGCAAGCAATGCGGCAGCGATGA 1448
Query 1438 GGAAGAACTAGAAGACCGTACGGTCAAAGAATGTAATAAAAGCGACAAGAGTTTAATAAG 1497
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1449 GGAAGAACTAGAAGACCATACGGTCAAAGAATGTAATAAAAACGACAAGAGTTTAATAAG 1508
Query 1498 CATTTGTAGCCCATTAGGAGGTTAATTACGTTGATTTAAGGAGGTTATAAA-ATTGGTGG 1556
|||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||
Sbjct 1509 CATTTGTAGCCCATTAGGAGGTTAATTACGTTCATTTAAGGT--TTA-AAATATTGGTGG 1565
Query 1557 GTTTTTGTTTTGTCTTGTGAGGTTGTAATTaaaaaaaTGAATGGCTTTTGCAAGTGAATA 1616
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1566 GTTTTTGTCTTGTCTTGTGAGGTTGTAATTAAAAAAATCAATGGCTTTTGCAAGTGAATA 1625
Query 1617 TTTTAAAACTGTTTATTTAATGACTTTTGC 1646
||||||||||||||| ||||||||||||||
Sbjct 1626 TTTTAAAACTGTTTAATTAATGACTTTTGC 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5