BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471384
Length=2518
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12360.1 | Symbols: KEU | Sec1/munc18-like (SM) proteins sup... 3999 0.0
> AT1G12360.1 | Symbols: KEU | Sec1/munc18-like (SM) proteins superfamily
| chr1:4200876-4206404 FORWARD LENGTH=2557
Length=2557
Score = 3999 bits (2165), Expect = 0.0
Identities = 2436/2560 (95%), Gaps = 45/2560 (2%)
Strand=Plus/Plus
Query 1 GAAGGTTCGAAGCTTGGTTTACCGATTCAAACCGCCGGTTCGGGTCAACACGGTTTTCGA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1 GAAGGTTCGAAGCTTGGTTTACCGATTCAAACCACCGGTTCGGGTCAACACGGCTTTCGA 60
Query 61 TAGAGATAAATTTAATTTTAATTAAAAAA-CTG-TTGGAGAGAG----------AGaaaa 108
||||||||||||||||||||||||||||| || |||||||||| | ||||
Sbjct 61 TAGAGATAAATTTAATTTTAATTAAAAAAGGTGTTTGGAGAGAGACAACCAAAAAAAAAA 120
Query 109 aaaaaaGAGAGCTTTCTTCATCGGTCTTCGTCTCGTCGTTTGATTAGTTCTCTACATTTT 168
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAAAAAAAGAG-TTTCTTCATCGGTCTTCGTCTCGTCGTTTGATTAGTTCTCTACA-TTT 178
Query 169 ATTTTTGATTAGTTCGCGATTCATTTCTCTTTTGTCTCCGGTCAATCTTCTTGTTTGAT- 227
||||||||||||||||||||||||||| | ||||||||||||||| || || || |||
Sbjct 179 GTTTTTGATTAGTTCGCGATTCATTTCTATCTTGTCTCCGGTCAATATTTTTCTTCGATC 238
Query 228 C-T-G-TC-G--A---T--C-GGAGATTTAAGAAGTCTGAAATTGATAGATCGCAGCTAT 275
| | | || | | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct 239 CGTCGATCGGATATTTTGACTGGAGATTTAAGAAGTCTGAAATTGTTAGATCGCAGCTAT 298
Query 276 GTCGTACTCCGACTCCGATTCGTCGTCTCATGGTGGCGACTACAAGAATTTCCGACAGAT 335
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 GTCGTACTCTGACTCCGATTCGTCGTCTCATGGTGGCGAGTACAAGAATTTCCGACAGAT 358
Query 336 TACGCGTGAACGACTCTTGTATGAGATGCTTAGATCTGCAAAGACTGGGAGCTCAAAATC 395
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 TACGCGTGAACGACTCTTGTATGAGATGCTTAGATCTGCAAAGACAGGGAGCTCAAAATC 418
Query 396 CACCTGGAAGGTACTAATCATGGACAAACTTACTGTCAAGATAATGTCGTACGCCTGCAA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CACCTGGAAGGTACTAATCATGGACAAACTTACTGTCAAGATAATGTCGTACGCCTGCAA 478
Query 456 AATGGCTGATATCACACAAGAAGGAGTTTCATTGGTTGAGGACATATTTAGACGAAGACA 515
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 AATGGCTGATATCACACAAGAAGGAGTTTCATTGGTTGAAGACATATTTAGACGAAGACA 538
Query 516 ACCTCTACCTTCAATGGATGCGATATACTTCATCCAGCCAACTAAAGAGAATGTCATCAT 575
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACCACTTCCTTCAATGGATGCAATATACTTCATCCAGCCAACTAAAGAGAATGTCATCAT 598
Query 576 GTTCTTGTCGGACATGTCTGGAAAATCACCCTTGTACAAGAAGGCATTTGTTTTCTTCAG 635
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 599 GTTCTTGTCAGACATGTCTGGGAAATCACCCTTGTACAAGAAGGCATTCGTTTTCTTCAG 658
Query 636 TTCACCGGTTTCCAAGGAACTGGTTGGTCACATCAAGAAAGATTCCAGTGTATTACCTCG 695
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TTCACCGGTTTCCAAGGAACTGGTTGGTCACATCAAGAAAGATTCGAGTGTATTACCTCG 718
Query 696 GATTGGAGGATTGAGAGAGATGAATTTGGAGTTTTTTGCCATTGATAGCCAGGGTTTCAT 755
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GATTGGAGCATTGAGAGAGATGAATTTGGAGTTTTTTGCCATTGATAGCCAGGGTTTCAT 778
Query 756 CACTGATCATGAGAGAGCTTTAGAGGATCTTTTCGGTGACGAGGAAACTTCTCGAAAAGG 815
|| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 779 AACCGATCATGAGCGAGCTTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGG 838
Query 816 CGATGCGTGCTTGAACGTGATGGCTTCTCGAATTGCCACAGTCTTTGCTTCACTACGGGA 875
||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||
Sbjct 839 CGATGCGTGCTTGAATGTGATGGCTTCTCGAATTGCTACAGTCTTTGCTTCGTTGCGGGA 898
Query 876 ATTTCCAGCAGTACGGTACCGAGCTGCAAAGTCACTTGATGCATCGACAATGACAACTTT 935
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATTCCCAGCAGTACGATACCGAGCTGCAAAGTCACTTGATGCATCGACAATGACAACTTT 958
Query 936 GCGCGATTTAATTCCCACAAAGCTTGCAGCTGGAATCTGGAATTGTCTGGCAAAACATAA 995
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCGCGATTTAATTCCAACAAAGCTTGCAGCTGGAATCTGGAATTGTCTGGCAAAACATAA 1018
Query 996 ACAATCGATTGAAAATTTTCCTCAGACTGAAACTTGCGAGCTACTCATTCTTGACAGATC 1055
|| |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1019 GCAGTCGATTGAAAATTTTCCTCAAACTGAAACATGCGAGCTACTCATCCTTGACAGATC 1078
Query 1056 CATTGACCAGATTGCCCCTGTTATACATGAGTGGACATATGATGCTATGTGCCATGATTT 1115
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CATAGACCAGATTGCCCCTGTTATACATGAGTGGACATATGATGCTATGTGCCATGATTT 1138
Query 1116 ACTGAACATGGAAGGGAACAAATATGTACATGTGATTCCAAGCAAATCAGGCGGACAACC 1175
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACTGAACATGGAAGGAAACAAATATGTACATGTGATTCCAAGCAAATCAGGCGGACAACC 1198
Query 1176 AGAGAAGAAAGATGTGCTCTTAGAGGAACATGATCCTATTTGGCTAGAGCTTCGACATGC 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGAGAAGAAAGATGTGCTCTTAGAGGAACATGATCCTATTTGGCTAGAGCTTCGACATGC 1258
Query 1236 ACATATAGCAGATGCTAGTGAAAGATTGCATGACAAGATGACTAACTTCTTATCGAAAAA 1295
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1259 ACATATAGCAGATGCTAGTGAAAGATTGCATGACAAGATGACCAATTTCTTATCGAAAAA 1318
Query 1296 CAAAGCTGCTCAGCTTCAGGGTAAGAGAGATGGAGCTGAGCTTTCTACAAGAGATTTGCA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CAAAGCTGCTCAGCTTCAGGGTAAGAGAGATGGAGCTGAGCTTTCTACAAGAGATTTGCA 1378
Query 1356 GAAGATGGTTCAAGCATTGCCACAGTACAGTGAACAAATTGACAAGCTCTCTCTCCATGT 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 GAAGATGGTTCAAGCATTGCCACAGTACAGTGAACAAATTGACAAGCTCTCTCTCCACGT 1438
Query 1416 AGAGATTGCTAGAAAACTCAACGACCTTATCAGAGAGCAAGGACTTCGGGAGCTTGGACA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGAGATTGCTAGAAAACTCAACGACCTTATCAGAGAGCAAGGACTTCGGGAGCTTGGACA 1498
Query 1476 ACTTGAACAAGACCTTGTTTTTGGTGATGCTGGAATGAAGGATGTGATTAAATATTTGAG 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACTTGAACAAGACCTTGTTTTTGGTGATGCTGGAATGAAGGATGTGATTAAATATTTGAG 1558
Query 1536 TACTCAAGAGGAGGCAAGCCGTGAAGGTAAGTTACGCCTGATGATGATCCTCGCAACAAT 1595
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1559 TACTCAAGAGGAGGCAAGCCGTGAAGGTAAGTTACGCCTGTTGATGATCCTCGCAACAAT 1618
Query 1596 TTACCCTGAAAAGTTTGAAGGTGAAAAAGGTCAAAATCTAATGAAGTTGGCAAAACTCTC 1655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1619 TTACCCTGAAAAGTTTGAAGGTGAAAAAGGTCAAAATCTAATGAAGTTGGCCAAACTCTC 1678
Query 1656 ATCTGATGACATGACCGCTGTAAATAATATGAGCTTACTTGGTTCAGCCGTCGATGCTAA 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ATCTGATGACATGACCGCTGTAAATAATATGAGCTTACTTGGTTCAGCCGTCGATGCTAA 1738
Query 1716 AAAGAATACCCCGGGAGGTTTCTCTTTGAAGTTTGACCTTCACAAGAAAAAACGAGGTGT 1775
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||
Sbjct 1739 AAAGAATACCCCGGGAGGTTTCACTTTGAAATTTGACCTTCACAAGAAAAAACGAGCTGT 1798
Query 1776 CAGGAAAGAGCGCCAAGAGGAAGCAGCATGGCAGTTATCTCGTTTTTACCCCATGATTGA 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 CAGGAAAGAGCGCCAAGAGGAAGCAGCATGGCAGTTATCTCGTTTTTACCCCATGATTGA 1858
Query 1836 GGAACTCATTGAAAAACTTAGCAAAGGAGAATTGCCAAAAGAGGATTTCCCGTGTATGAA 1895
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1859 GGAACTCATCGAAAAACTTAGCAAAGGAGAATTGCCAAAAGAGGATTTCCCATGTATGAA 1918
Query 1896 CGACCCAAGCCCAAGTTTCCACGGATCAACTTCACTGTCATCAGCAGCAACTAGTAGTCA 1955
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 1919 CGACCCAAGCCCAAGTTTCCACGGATCAACCTCACTTTCATCAGCAGCAAGTAGTAGTCA 1978
Query 1956 AGGTCAAGCTGCTCAGTCCATGAGATCAAGACGCACCCCAACATGGGCTAAACCTCGAGG 2015
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1979 AGGTCAAGCTGCTCAGTCCATGAGATCAAGACGCACACCAACATGGGCTAAACCTCGAGG 2038
Query 2016 TTCAGATGATGGATATTCAAGTGATTCGGTACTGAGACATGCATCAAGCGATTTCAGGAA 2075
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2039 TTCAGATGATGGATATTCAAGTGATTCGGTATTGAGACATGCGTCAAGCGATTTCAGGAA 2098
Query 2076 GATGGGACAGCGAATATTTGTGTTCATCGTTGGTGGAGCGACAAGATCAGAGTTAAAAGT 2135
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2099 GATGGGACAGCGAATATTTGTGTTCATCGTCGGTGGAGCGACTAGATCAGAGTTAAAAGT 2158
Query 2136 ATGCCATAAACTATCCACAAAACTCAAAAGAGAAGTAATCCTCGGGTCCACGAGCCTGGA 2195
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2159 ATGCCACAAACTATCCACAAAACTCAAAAGAGAAGTAATCCTCGGTTCCACGAGCCTGGA 2218
Query 2196 CGATCCTCCACAGTTCATAACGAAATTGAAGCTTCTGACTGCAAATGAT--TT-ATCTAT 2252
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |
Sbjct 2219 CGATCCTCCACAGTTCATAACGAAATTGAAGCTTTTGACTGCAAATGATGATTTATCTTT 2278
Query 2253 AGACGATCTCCAAATATGAGAATCCAGATCTCAAATCAAATCCCTGTCTTTGTTCTCTTA 2312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 AGACGATCTCCAAATATGAGAATCCAGATCTCAAATCAAATCCCTGTCTTTGTTCTCTTT 2338
Query 2313 TCTC-C-CAATCTAATTTGTAACCAAGTGAACAAAAC-TCATCAGATTATGAGATCATGA 2369
| || | ||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2339 TGTCTCTCAAACTAATTTGTAACCAAGTGAACAAAAAATCGTCAGATTATGAGATCATGA 2398
Query 2370 TTGTAAGTGTACCCTTATTGTTTG-CCGGATAAATATGTAAAGCAACTCATAAAGTTGAC 2428
|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 2399 TTGTAAGTGTACCCAAATTGTTTGTCCG-ATAAATATGTAAAGCAACTCATAAAGTTGAC 2457
Query 2429 TTCTAGATCTTTGGCTATT-----GT--C-TT-G-TTGTGTAAATTACCTAAACCCTTCT 2478
||||||||||||||||||| || | || | |||||||||||||||||||||||||
Sbjct 2458 TTCTAGATCTTTGGCTATTTTCTTGTTACATTCGATTGTGTAAATTACCTAAACCCTTCT 2517
Query 2479 TTACTTTTTCAGAATCTTCTCTTTTGTACGTCTTTCAATT 2518
|| |||||||||||||||||||| | || || ||||||||
Sbjct 2518 TTGCTTTTTCAGAATCTTCTCTTATATAAGTTTTTCAATT 2557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124965855013
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5