BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471385
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12370.2 | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206374... 2673 0.0
> AT1G12370.2 | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206374-4208951
REVERSE LENGTH=1726
Length=1726
Score = 2673 bits (1447), Expect = 0.0
Identities = 1602/1679 (95%), Gaps = 1/1679 (0%)
Strand=Plus/Plus
Query 1 ATCGCGCGCTTTGTCGCTTGAGCATCCCCTGCGCAAGTTATCCTCCTCCGCTGTCGTATA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1 ATCGCGCGCTTTGTCGCTTGAGCATCCCCTGCGCAAATTATCCTCCTCCGCCGTCGCATA 60
Query 61 AACGGCGCACATTAGTGAAAATCCGAAAAATCCGTCTCTCCTCCTTCGTAATGGCGACGG 120
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 61 ACCGGCGCACATTAGTG-AAATCGGAAAAATCCGTCTCTCCTCCTTCGTAATGGCGTCGA 119
Query 121 CAATCTCCGTTCAAACGGGTCGGATCCGGATCCTAAAGAAAGGCTCATGGCAACCGTCGG 180
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 CAGTCTCAGTTCAACCGGGTCGGATCCGGATCCTAAAGAAAGGCTCATGGCAACCGTTGG 179
Query 181 ATCAAACGGTGGGTCCCGTCGTTTACTGGATGTTCAGAGATCAACGGTTGAAAGACAACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 ATCAAACGGTGGGTCCCGTCGTTTACTGGATGTTCAGAGATCAACGGTTGAAAGATAACT 239
Query 241 GGGCGTTAATCCATGCCGTTGATCTTGCAAACAGAACCAACGCGCCGGTGGCCGTCGTGT 300
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 240 GGGCGTTAATCCACGCCGTTGATCTGGCAAACAGAACCAACGCGCCGGTGGCCGTCGTTT 299
Query 301 TCAATCTGTTCGATCAGTTTCTGGACGCAAAAGCGAGGCAATTAGGGTTTATGTTAAAGG 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCAATCTGTTCGATCAATTTCTGGACGCAAAAGCGAGGCAATTAGGGTTTATGTTAAAGG 359
Query 361 GTTTGCGCCAGCTTCACCACCAAATCGATTCTCTTCAAATTCCGTTTTTTCTCTTACAGG 420
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 GTTTGCGTCAGCTTCACCACCAAATCGATTCTCTCCAAATTCCGTTTTTTCTCTTACAGG 419
Query 421 GAGATGCAAAGGAGACAATTCCTAATTTCCTCACAGAATGTGGAGCTTCACATCTGGTTA 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGATGCAAAGGAGACAATCCCTAATTTCCTCACAGAATGTGGAGCTTCACATCTGGTTA 479
Query 481 CTGATTTCTCGCCTTTACGGGAAATTCGGAGTTGTAAAGATGAGGTTGTGAAGAGGACGA 540
|||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||| ||||
Sbjct 480 CTGATTTCTCTCCTTTACGGGAAATCCGGCGTTGTAAAGATGAGGTTGTCAAGAGAACGA 539
Query 541 GTGATTCATTAGCAATTCATGAAGTTGATGCACACAATATAGTTCCAATGTGGGCTGCTT 600
||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 540 GTGATTCATTAGCGATACATGAAGTTGATGCTCACAATGTAGTTCCAATGTGGGCTGCTT 599
Query 601 CGGGTAAATTGGAGTACAGTGCTAGAACAATTAGGGGTAAGATCAACAAGCTACTACCTG 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGAGTAAATTGGAGTACAGTGCTAGAACAATTAGGGGTAAGATCAACAAGCTACTACCTG 659
Query 661 ATTACCTCATTGAGTTTCCTAAACTTGAGCTGCCGAAGAAGAAGTGGACCGGGATGATGG 720
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 660 ATTACCTCATTGAGTTTCCTAAACTTGAGCCGCCGAAGAAGAAATGGACGGGGATGATGG 719
Query 721 ATAAGAAGCTGGTTGATTGGGATAGCCTCATTGATAAAGTTGTAAGGGAGGGTGGAGAAG 780
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 ATAAGAAGCTTGTTGATTGGGATAGCCTCATTGATAAAGTTGTAAGGGAGGGTGCAGAAG 779
Query 781 TTCCTGAGATTGAATGGTGTGTGCCGGGAGAAGATGCGGGGATGGAAGTATTAATGGGGA 840
||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 780 TTCCTGAAATTGAATGGTGTGTGCCTGGAGAAGATGCAGGGATTGAAGTATTGATGGGGA 839
Query 841 AGAAAGATGGGTTTTTGACAAAGAGGTTGAAGAATTATTCAGCGGACCGGAATAATCCTG 900
| |||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 840 ATAAAGATGGTTTTTTGACGAAGAGGTTGAAGAATTATTCAACTGACCGGAATAATCCTA 899
Query 901 TAAAGCCGAAAGCACTCTCTGGTCTCTCTCCTTATCTACATTTCGGGCAGATATCAGCTC 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 TAAAGCCGAAAGCACTCTCTGGTCTCTCTCCTTATCTACATTTCGGGCAGGTATCAGCTC 959
Query 961 AGCGATGTGCCTTGGAGGCGCGTAAAGTCCGGAATACTTCCCCTCAGGCGGTCGACACAT 1020
|||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 960 AGCGTTGTGCCTTGGAGGCGCGTAAAGTCCGGAGTACTTCCCCTCAGGCGGTAGACACAT 1019
Query 1021 TCTTGGAAGAATTGATTGTGCGAAGAGAACTCTCCGACAATTTTTGCTACTATCAACCTC 1080
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 TCTTGGAAGAATTGATTGTGCGAAGAGAACTCTCCGACAATTTTTGCTATTATCAACCTC 1079
Query 1081 ATTATGATTCTTTGAAGGGAGCTTGGGAGTGGGCACGCAAGTCATTAATGGATCATGCTT 1140
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 ATTATGATTCTTTGAAGGGAGCTTGGGAGTGGGCACGCAAGTCACTAATGGATCATGCTT 1139
Query 1141 CAGATAAGAGAGAACACATTTACTCGTTGGAGCAGTTAGAGAAGGGACAGACAGCTGATC 1200
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1140 CAGATAAGAGGGAACACATTTACTCGTTGGAGCAGTTAGAGAAGGGACTGACAGCAGATC 1199
Query 1201 CTCTATGGAATGCTTCACAGTTAGAGATGGTTTATCAAGGGAAAATGCACGGTTTCATGA 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTCTATGGAATGCTTCACAGTTAGAGATGGTTTATCAAGGGAAAATGCACGGTTTCATGC 1259
Query 1261 GAATGTATTGGGCAAAGAAGATTCTAGAATGGACCAAAGGACCTGAAGAGGCCCTCTCAA 1320
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1260 GAATGTATTGGGCAAAGAAGATTCTAGAATGGACCAAGGGACCTGAAGAGGCTCTCTCAA 1319
Query 1321 TATCCATATATCTAAATAACAAGTATGAGATTGATGGTCGTGACCCGAGTGGATATGTTG 1380
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TATCCATCTATCTAAATAACAAGTATGAGATTGATGGTCGTGACCCGAGTGGATATGTTG 1379
Query 1381 GGTGTATGTGGTCTATATGCGGTGTTCATGATCAGGGATGGAAAGAGAGGCCGGTTTTTG 1440
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGTGCATGTGGTCTATATGTGGCGTTCATGATCAGGGATGGAAAGAGAGGCCGGTTTTTG 1439
Query 1441 GGAAGATACGGTACATGAACTACGCGGGTTGCAAACGGAAATTCAATGTGGACAGTTACA 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1440 GGAAGATACGGTACATGAACTACGCGGGTTGCAAACGGAAATTCAATGTGGATAGTTACA 1499
Query 1501 TCTCTTATGTCAAGAGTTTTGTGTCAGTAACAAAGAAGAAGAGGAAAGCCGAAGAACAGC 1560
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1500 TCTCTTATGTCAAGAGTTTGGTGTCAGTAACAAAGAAGAAGAGGAAAGCTGAAGAACAGC 1559
Query 1561 TTACCAGAGACTCTATTGATCCCAAGATAAATAGTGTTTAGGTTAACTTCGAATGCCTTT 1620
| |||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1560 TCACCAGAGACTCTGTTGATCCCAAGATAACTATTGTTTAGGTTAACTTTGAATGCCTTG 1619
Query 1621 GTGTTGTTACTTGTTAGACTACCTTGCCCTGCGTTGGCCAGTTTTATATTCAATGTATT 1679
|| ||||||||||||||||||| |||||||| ||||| || |||||||||||| |||||
Sbjct 1620 GTATTGTTACTTGTTAGACTACTTTGCCCTGTGTTGGGCATTTTTATATTCAACGTATT 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82981500885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5