BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471390

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12400.1 | Symbols:  | Nucleotide excision repair, TFIIH, su...   477    4e-134
  AT1G12350.1 | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcy...   106    2e-22 


> AT1G12400.1 | Symbols:  | Nucleotide excision repair, TFIIH, 
subunit TTDA | chr1:4221863-4222837 FORWARD LENGTH=607
Length=607

 Score =  477 bits (258),  Expect = 4e-134
 Identities = 378/429 (88%), Gaps = 36/429 (8%)
 Strand=Plus/Plus

Query  1    GTTTTGTAATTAGGTTATCTGATAGAGCTAATTC-T-TCTCCTTCACTGTGAC---AATC  55
            |||||||||||||||||||| ||| ||||||| | | ||||||| ||||||||   ||||
Sbjct  1    GTTTTGTAATTAGGTTATCTTATAAAGCTAATCCTTCTCTCCTTTACTGTGACAATAATC  60

Query  56   GTCGTTATCAAGGTGATTTC-TT-TCT--CT----C-T---TT---CTC-----TG---C  92
            |||||||||||||||||||| || |||  ||    | |   ||   |||     ||   |
Sbjct  61   GTCGTTATCAAGGTGATTTCTTTCTCTGCCTCAAACATCGCTTACCCTCTTGATTGATTC  120

Query  93   C-CCAATCTTCTTCGTGTGGTTTCACAGTTTTTACAGGTATGGTTAATGCAATCAAAGGA  151
            | |||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||
Sbjct  121  CTCCAATCTTCTTCGTGTGGTTTCACAGGTTTTAC--TTATGGTTAATGCAATCAAAGGA  178

Query  152  GTGTTCATCTCTTGCGATATTCCGATGACACAATTCATAGTGAACATGAACAATTCGATG  211
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  GTGTTCGTCTCTTGCGATATTCCGATGACACAATTCATAGTGAACATGAACAATTCGATG  238

Query  212  CCTCCGTCTCAGAAATTCATAATTCATGTACTTGATAGTACTCACTTGTTTGTGCAGCCA  271
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  239  CCTCCGTCTCAGAAATTCATAATTCATGTACTTGATAGTACTCACTTGTTCGTGCAACCA  298

Query  272  CATGTTGAGCAGATGATTCGCAGTGCCATTTCTGATTTTAGAGATCAAAACTCTTACGAG  331
            ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  299  CATGTAGAGCAGATGATCCGCAGCGCCATTTCTGATTTTAGAGATCAAAACTCTTACGAG  358

Query  332  AAGCCCACTTCTTAGATCA-ATCACATCACACTCGCATGCTTCTTCTTTGTCATTCATTT  390
            ||||||||||||||||||| |||||||||||||    |||||||| ||| || |||||||
Sbjct  359  AAGCCCACTTCTTAGATCACATCACATCACACT----TGCTTCTTGTTTTTCTTTCATTT  414

Query  391  GATTCAAAT  399
            |||||||||
Sbjct  415  GATTCAAAT  423


> AT1G12350.1 | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcysteine 
synthetase | chr1:4198413-4200802 FORWARD LENGTH=1279
Length=1279

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 74/82 (90%), Gaps = 2/82 (2%)
 Strand=Plus/Plus

Query  1   GTTTTGTAATTAGGTTATCTGATAGAGCTAATTCTTCTCCTTCACTGTGACAATCGTCGT  60
           |||| ||||||||||||||| ||| ||||||| ||||| | ||||  |||||||||||||
Sbjct  9   GTTTGGTAATTAGGTTATCTTATAAAGCTAATCCTTCT-C-TCACACTGACAATCGTCGT  66

Query  61  TATCAAGGTGATTTCTTTCTCT  82
           ||||||||||||||||||||||
Sbjct  67  TATCAAGGTGATTTCTTTCTCT  88



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5