BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471391
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease prote... 1502 0.0
> AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease proteolytic
subunit 2 | chr1:4223030-4225124 FORWARD LENGTH=1079
Length=1079
Score = 1502 bits (813), Expect = 0.0
Identities = 877/908 (97%), Gaps = 4/908 (0%)
Strand=Plus/Plus
Query 1 AAAACAAACAAAAAATC-AGTGTTCGGCTCTAACACGCTCGACGACCATGGCGGTCTCGT 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 AAAACAAACAAAAAATCTAGTGTTCGGCTCTAACACGCTCGACGACCATGGCGGTCTCGT 82
Query 60 TTAATACAACGCTTCACCAGCCTTCTCTGAGTCCGAGTTGTAGCATCAAGCTTTATTCTG 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 83 TTAATACAACGCTTCACCAGCCTTCTCTGAGTCCGAGCTGTAGCATCAAGCTTTATTCTG 142
Query 120 GGTTAAAGCCTCAATCTGCAAGCTTTTTGGCAAGTGGGTATCAGAATTTGAATAAGGAGT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 143 GGTTAAAGCCTCAATCTGCAAGCTTTTTGGCAAGTGGGTATCAGAATTTGAACAAGGAGT 202
Query 180 TCTATGGAAGAGTTCATAAGAGTCTGCAATCTGGGACTGGGAAAGCGAGCAGGTCACGGG 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TCTATGGAAGAGTTTATAAGAGTCTGCAATCTGGGACTGGGAAAGCGAGCAGGTCACGGG 262
Query 240 TTAAGATGATGCCAATAGGAACACCGAGAGTGCCTTACAGAAACCGAGAGGAAGGCACTT 299
| ||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 263 TAAAGATGATGCCAATAGGAACACCGAGAGTACCCTACAGAAACCGAGAAGAAGGGACTT 322
Query 300 GGCAATGGGTTGATATATGGAATGCCCTTTATCGAGAGCGTGTAATCTTCATTGGACAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GGCAATGGGTTGATATATGGAATGCCCTTTATCGAGAGCGTGTAATCTTCATTGGACAAA 382
Query 360 ACATTGATGAAGAGTTTAGCAACCAGATATTAGCAACCATGTTGTACCTCGATACTCTTG 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 383 ACATTGATGAAGAGTTTAGCAACCAGATATTAGCAACCATGTTGTACCTTGATACTCTTG 442
Query 420 ATGACTCAAGGAGGATTTATATGTACCTAAATGGTCCAGGCGGCGATCTTACTCCAAGTC 479
||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 443 ATGACTCGAGGAGGATTTATATGTACCTAAATGGTCCGGGTGGTGATCTTACTCCAAGTC 502
Query 480 TAGCCATCTATGATACAATGAAGAGCTTGAAAAGTCCGGTTGGGACACATTGCGTTGGGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TAGCCATCTATGATACAATGAAGAGCTTGAAAAGTCCGGTTGGGACACATTGCGTTGGGC 562
Query 540 TTGCTTATAACCTTGCAGGTTTTCTTCTTGCGGCGGGAGAAAAGGGTCACCGATTTGCGA 599
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 563 TTGCTTACAACCTTGCAGGTTTTCTTCTTGCGGCTGGAGAAAAGGGTCACCGATTTGCGA 622
Query 600 TGCCATTGTCAAGAATCGCCCTCCAATCACCAGCTGGTGCAGCCCGTGGTCAGGCTGATG 659
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 623 TGCCATTATCAAGAATCGCCCTCCAGTCACCAGCTGGTGCAGCCCGTGGTCAGGCTGATG 682
Query 660 ATATCCAAAATGAGGCAAAAGAGCTTTCAAGGATAAGAGATTACCTCTTCAATGAACTAG 719
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 683 ATATCCAAAATGAAGCAAAAGAGCTTTCAAGGATAAGAGACTACCTCTTCAATGAACTAG 742
Query 720 CCAAGAATACTGGCCAGCCTGCGGAAAGGGTCTTCAAAGACTTGAGCCGGGTGAAAAGGT 779
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CCAAGAATACAGGCCAGCCTGCGGAAAGGGTCTTCAAAGACTTGAGCCGGGTGAAAAGGT 802
Query 780 TCAATGCAGAAGAAGCTGTCGAGTATGGACTTATTGATAAGATTGTTAGACCACCGCGCA 839
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TCAATGCAGAGGAAGCAATCGAGTATGGACTTATTGATAAGATTGTTAGACCACCGCGCA 862
Query 840 TCAAAGAAGACGCTCCTCGCCAAGACGAAAGCGCAGGTCTCGGCTAGTCTTGT-GATTGT 898
||||||||||||||||||||||||||||||||||||| || |||||||||| | | ||||
Sbjct 863 TCAAAGAAGACGCTCCTCGCCAAGACGAAAGCGCAGGGCTAGGCTAGTCTTTTTGTTTGT 922
Query 899 GATTGTTA 906
||||||
Sbjct 923 --TTGTTA 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5