BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471392
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12420.1 | Symbols: ACR8 | ACT domain repeat 8 | chr1:422636... 2723 0.0
> AT1G12420.1 | Symbols: ACR8 | ACT domain repeat 8 | chr1:4226362-4229138
REVERSE LENGTH=1858
Length=1858
Score = 2723 bits (1474), Expect = 0.0
Identities = 1731/1847 (94%), Gaps = 50/1847 (3%)
Strand=Plus/Plus
Query 1 TGGAAGGATTATGTGAAAGCGTGCTTTGTCTATCA-TCT----agagagagagagag--a 53
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 1 TGGAAGGATTATGTGAAAGCGTGCTTTGTCTATCATTCTAGAGAGAGAGAGAGAGAGAAA 60
Query 54 AAAAGTAACAGTTTTTCGGAGCAATAAAAACGGCACCGTTCATTTAGAGAGAAACGCTGG 113
|||||||||||||| || || ||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AAAAGTAACAGTTTCTCAGACCAATAAAAACGGCACCGTTCATTTAGACAGAAACGCTGG 120
Query 114 TG-A-ATAGATTTT--A---G---A---TG-T-G------TT---AGAAGACGAAGAAGA 149
|| | | ||||||| | | | || | | || |||||| ||||||||
Sbjct 121 TGAAGAGAGATTTTAGATGTGTTAATTTTGCTGGAATTCTTTAGAAGAAGAAGAAGAAGA 180
Query 150 ACCAGAGGTTGAAAACGACGGCGTATTAGTTTGTATTAGAGATGGCGATGAAGGGTTATT 209
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 AACAGAGGTTGAAAACGACGGCGTATTAGTTTGTATCAGAGATGGCGATGAAGGGTTATT 240
Query 210 TGGATGAGTATGAAAAGCTTGTTATTAGGATGAACACTCCGAGGGTCGTTATCGACAATG 269
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TGGATGAGTATGAAAAGCTTGTTATTAGGATGAACACTCCAAGGGTCGTTATCGACAATG 300
Query 270 GTGTTTGTTCTTCAGCGACAATCGTCAAGGTTGATAGTTCAAGAAGAAATGGGATACTGT 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GTGTTTGTTCTTCAGCGACAATCGTCAAGGTTGATAGTTCAAGAAGAAATGGGATATTGT 360
Query 330 TAGAAGCTGTACAAATTCTCACAGATTTGAATCTCTCCATTAAAAAAGCTTACATTTCTT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAGAAGCTGTACAAATTCTCACAGATTTGAATCTCTCCATTAAAAAAGCTTACATTTCTT 420
Query 390 CTGATGGAAGATGGAACATGGATGTTTTTCATGTGACTGACTTAAACGGAAACAAATTGA 449
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 CTGATGGAACATGGAACATGGATGTTTTTCATGTCACTGACTTAAACGGAAACAAATTGA 480
Query 450 ATGACCAGAGCGTCTTGAGATACATTGAACAGTCGATTGAGACGGTTTACTATGGAGAAA 509
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ATGACCAGAGCGTCTTGAGATACATTGAACAGTCGATCGAGACGGTTTACTATGGAGAAA 540
Query 510 ACATTGAAGTAAACTGTTTAACAGCTTTAGAGTTAACCGGAACAGACCGAATCGGTTTAC 569
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 ACATTGAAGTAAACGGTTTAACAGCTTTGGAGTTAACCGGAACAGACCGAATCGGTTTAC 600
Query 570 TGTCTGAGATGTTTGCGGTTCTCTCTGATCTCAACTGTGATGTGGTTGACGCTAAGCTAT 629
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TATCTGAGATGTTTGCGGTTCTCTCTGATCTCAACTGTGATGTGGTTGACGCTAAGCTAT 660
Query 630 GGACACATAATGGTAGAGTTGCTTCTGTGATCTATCTCAGAGATGGTAGCTCTGGAGCTC 689
|||||||||| |||||||||||||||||||||||||||| |||| ||| ||| |||||||
Sbjct 661 GGACACATAACGGTAGAGTTGCTTCTGTGATCTATCTCAAAGATTGTATCTCAGGAGCTC 720
Query 690 CGATTCTTGATTCTCAACGGATATCAAAGATCGAGGGACGGTTAAAGAACGTTTTGAATG 749
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 CGATTCTCGATTCTCACCGGATATCAAAGATCGAAGGACGGTTAAAGAACGTTTTGAATG 780
Query 750 GTGATAACGATGTTAACTCTGCTGCAAAGACTTGTGTTTCTGTGGATTCGATGATGCACA 809
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 781 GCGATAACGATGTTAACTCTGCTGCAAAGACTTGTGTTACTGTGGATTCGATGATGCATA 840
Query 810 TAGAACGTAGACTTCATCAGCTAATGTTTGAAGATAGAGACTATGAGAGGAGATCCAATA 869
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |
Sbjct 841 TCGAACGTAGACTTCATCAGCTTATGTTTGAAGATAGAGACTACGAGAGGAGATCTAAGA 900
Query 870 AACAGGAGAGATCTCCAACGGTGGTTGTGACGGTTCAGAATTGGGCTGAGAGGAGTTACT 929
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 AACATGAGAGATCTCCAATGGTGGTTGTGACGGTTCAGAATTGGGCTGAGAGGGGTTACT 960
Query 930 CTGTCGTTAATGTTCATTGTCGGGACCGGACCAAGCTTCTATTCGATGTGGTTTGTACGT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTGTCGTTAATGTTCATTGTCGGGACCGGACCAAGCTTCTATTCGATGTGGTTTGTACGT 1020
Query 990 TAACCGATATGGAATATGCCGTGTTCCACGCTACTATCAACACGGCTGAAGACCAAGCTC 1049
||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||
Sbjct 1021 TAACCGATATGGAATATGCTGTGTTTCATGCTACTATCAACACAGCTGAAGACCAAGCTC 1080
Query 1050 ACTTGGAATTCTATATCCGGCATAAAGATGGATCACCGATAAGTTCGGAGGCAGAGAGGC 1109
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1081 ACTTGGAATTCTATATCCGGCATAAGGATGGATCACCGATAAGTTCGGAAGCAGAGAGGC 1140
Query 1110 AACGAGTGATTTTATGCTTAGAAGCTGCAGTCGAAAGAAGAGCACTAGAGGGAGTGAGAT 1169
||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1141 AACGAGTGATTCAATGCTTAGAGGCTGCAGTTGAAAGAAGAGCACTAGAGGGAGTGAGAT 1200
Query 1170 TAGAGCTGAGGCATCCGGACAAACAAGGCTTACTAGCTGAAGTAACTCGGACATTCAGAG 1229
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1201 TAGAGCTGAGGCATCCGGACAAACAAGGTTTACTAGCGGAAGTAACGCGGACATTCAGAG 1260
Query 1230 AAAACGGTCTGAATGTTACAAGAACAGAGATATCAACGAGTAGCGAGATGGCTACAAACA 1289
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 AAAACGGTCTGAATGTTACAAGAACAGAGATATCAACGAGTAGCGACATGGCTACAAACA 1320
Query 1290 TATTCTATGTAACTGATGCAAATGGAGACGAACCAGACTTCAAATTGATTGAATCGGTTA 1349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1321 TATTCTATGTAACTGATGCAAATGGAGACGAACCGGACTTCAAATTGATTGAATCGGTTA 1380
Query 1350 GGGAGAAAATCGGTTTGGAGTGTTTAAGAGTGAAGGAAATGCCAACAATGAATCATAAGA 1409
||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 1381 GGGAGAAAATCGGTTTGGAGTGTTTGAGAGTGAAGGAGATGCCAACAATGTATCATAAGA 1440
Query 1410 AGGGAGATGGAGAAGAACAACAG-A--CCAAAGCAGTGTTGGTTTCACTTGGGAGTTTGG 1466
|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1441 AGGGAGATGGAGAAGAACAACAACAAACCAAAGCAGTGTTGGTTTCACTTGGAAGTTTGG 1500
Query 1467 TTTGGAGAAATCTATTCAACTTTGGTCTTATCAAATCATGTTCTTAAATCATTCAAATCT 1526
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1501 TTTGGAGAAATCTATTCAACTTTGGTCTTATCAAATCATGTTCTTAAATCTTTCAAATCT 1560
Query 1527 TTGGTTAACCGAACCAC-G-----ATGAAATTCATCCTTTGAGAGGCACGCGGACTTTGT 1580
| |||| |||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1561 TGGGTTGACCGAACCACCGGTTCGATGAAATTCATCCTTTGAGAGGCACGCGGATTTTGT 1620
Query 1581 TTAAGAAGTCTGCGTGCCTTAGAAAGGATAAACTTTTTTAT-CGGTGTGGTTGG-TAGGT 1638
||||||||||||| |||||| |||||||||||| |||| || || ||||||| | |||||
Sbjct 1621 TTAAGAAGTCTGCTTGCCTTGGAAAGGATAAACCTTTTGATTCG-TGTGGTTTGATAGGT 1679
Query 1639 TAAATTTTAAGTTAGGTGATGGTTTGGTCATGTCATGTTATTGTAAATAGAGAAAAAGAG 1698
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1680 TAAATTTTAAGTTAGGTGATGGTTTGGTCATGTCATGTTATTGTAAATATAGAAAAAGAG 1739
Query 1699 GAGAGGGATGATTAGAAATTCAGAAATTGCTTACttttttttctttttttATTGTGGGGT 1758
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1740 GAGAGGGATGATTAGAAATTCAGAAATTGCTTACTTTTTTTT-T------ATTGTGGGGT 1792
Query 1759 TTTAGATGATAGAAGAGGTTGTACAAAAGTTTCTAAGATTAATTATT 1805
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1793 TTTAGATGAAAGAAGAGGTTGTACAAAAGTTTCTAAGATTAATTATT 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89306769555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5