BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471393
Length=2981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12430.2 | Symbols: ARK3 | armadillo repeat kinesin 3 | chr1... 3825 0.0
> AT1G12430.2 | Symbols: ARK3 | armadillo repeat kinesin 3 | chr1:4233873-4238764
REVERSE LENGTH=3224
Length=3224
Score = 3825 bits (2071), Expect = 0.0
Identities = 2374/2515 (94%), Gaps = 41/2515 (2%)
Strand=Plus/Plus
Query 490 ACATATACACTTGGGCAGCTTGGGGAAGAAGATGTCGCTGATCGTGGAATAATGGTCCGT 549
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 696 ACATATACACTTGGGCAACTGGGGGAAGAAGATGTCGCTGATCGTGGAATTATGGTCCGT 755
Query 550 GCTATGGAGGATATTTTAGCTGAAGTGTCGTTGGAGACGGATTCTATATCTGTCTCCTAT 609
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 756 GCTATGGAAGATATTTTAGCTGAAGTTTCGTTGGAGACGGATTCTATATCTGTCTCCTAT 815
Query 610 TTGCAGCTTTATATGGAGACTGTACAAGATCTTCTTGATCCGTCTAATGATAACATTGCT 669
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 816 TTGCAGCTTTATATGGAGACTGTACAAGACCTTCTTGATCCGTCTAATGATAACATTGCT 875
Query 670 ATAGTTGAGGACCCGAAAAATGGAGATGTTTCTCTTCCAGGTGCCACTTTGGTCGAAATT 729
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 876 ATAGTTGAGGACCCGAAAAATGGAGATGTGTCTCTTCCAGGTGCCACTTTGGTTGAAATT 935
Query 730 AGGGATCAACAAAGCTTCCTGGAACTACTGCAACTCGGAGAAGCTCACCGGTTTGCTGCT 789
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 936 AGGGATCAACAAAGCTTCTTGGAACTACTGCAACTCGGAGAAGCTCACCGGTTTGCTGCT 995
Query 790 AATACCAAACTGAACACCGAGTCATCCCGTAGTCATGCTATCTTAATGGTAAATGTCAGG 849
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 996 AATACCAAATTGAACACCGAGTCATCCCGTAGTCATGCTATTTTAATGGTAAATGTTAGG 1055
Query 850 CGCTCTTTGAAAACAAGAGATGGCTTGTCAAGTGAAAGTAATGGAAACTCCCATATGACT 909
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1056 CGCTCTATGAAAACAAGAGATGGTTTGTCAAGTGAAAGTAATGGAAACTCCCATATGACT 1115
Query 910 AAATCTCTTAAGCCTCCTGTTGTCCGGAAGGGAAAATTAGTCGTGGTGGATCTTGCTGGA 969
|| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 1116 AAGTCTCTCAAGCCTCCTGTTGTCCGGAAAGGAAAGTTAGTTGTGGTGGATCTCGCTGGG 1175
Query 970 TCGGAACGTATCAATAAATCAGGAAGTGAGGGACATACACTAGAGGAAGCCAAATCTATC 1029
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TCAGAACGTATCAATAAATCAGGAAGTGAGGGACATACACTAGAGGAAGCCAAATCTATC 1235
Query 1030 AATCTATCTCTGAGTGCACTGGGGAAATGCATCAATGCACTTGCTGAAAATAGTTCTCAT 1089
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1236 AATCTCTCTCTGAGTGCACTGGGGAAATGCATCAATGCACTTGCTGAGAATAGTTCTCAT 1295
Query 1090 GTTCCATTCCGTGATTCAAAGCTAACTAGATTGCTTAGAGATTCATTTGGAGGCACTGCA 1149
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1296 GTTCCATTCCGTGATTCAAAGCTAACTAGATTACTTAGAGATTCATTTGGAGGCACTGCA 1355
Query 1150 AGGACCTCCTTAGTTATTACAATTGGTCCATCACCACGACATCGAGGGGAGACAACAAGC 1209
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1356 AGAACCTCCTTAGTTATTACAATTGGTCCATCACCACGACATCGAGGAGAGACAACAAGC 1415
Query 1210 ACTATAATGTTTGGGCAAAGGGCTATGAAAGTGGAAAATATGGTGAAGTTAAAGGAAGAG 1269
||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1416 ACTATAATGTTTGGGCAGAGGGCAATGAAAGTGGAAAATATGGTGAAGATAAAGGAAGAG 1475
Query 1270 TTTGATTACAAAAGCTTGTCTAGAAGACTTGAAGTACAACTAGACAATCTAATCGAGGAA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1476 TTTGATTACAAAAGCTTGTCTAGAAGACTTGAAGTACAACTAGACAATCTAATTGAGGAA 1535
Query 1330 AATGAAAGGCAGCAGAAAGCATTCGTTGATGAAATCGAAAGAATAACCGTAGAAGCTCAT 1389
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1536 AATGAAAGACAGCAGAAAGCATTCGTTGATGAAATCGAAAGAATAACCGTAGAGGCGCAT 1595
Query 1390 AACCAAATATCCGAGGCTGAAAAGAGATATGCCAATGCACTAGAGGAGGAAAAGCTAAGG 1449
|||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1596 AACCAAATTTCTGAGGCTGAAAAGAGATATGCCAATGCTCTAGAGGACGAAAAGCTAAGG 1655
Query 1450 TATCAGAATGATTACATTGAATCAATAAAGAAGCTTGAGGAGAATTGGTCAAAGAATCAG 1509
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 TATCAGAATGATTACATGGAATCAATAAAGAAGCTTGAGGAGAATTGGTCAAAGAATCAG 1715
Query 1510 AAAAAGCTGGCTGCTGAAAGACTTGCACTTGGAGaaaaaaaTGGCCTAGACATCACATCA 1569
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1716 AAAAAGCTTGCTGCTGAAAGACTTGCCCTTGGAGAGAAAAATGGCCTAGACATCACAT-- 1773
Query 1570 CACGGCAATGTAACATCTCTGTTATCAATAGCCCCAGCCATAGAAGAAGTCTCTGAACTG 1629
|| |||| || | | | |||||||||||||||| |||| |||||||||||||||
Sbjct 1774 CA----AATGGAA-A---CAG--ATCAATAGCCCCAGCCTTAGAGGAAGTCTCTGAACTG 1823
Query 1630 AAAAAGTTGCTTCAGAAAGAAGCTCAATCAAAGATGGCTGCTGAAGAGGAAGTGAATAGG 1689
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1824 AAAAAGTTGCTTCAGAAAGAAGCTCAATCAAAGATGGCGGCTGAAGAGGAAGTGAATAGG 1883
Query 1690 CTTAAACATCAACTCACCGAATTTCAA-AAAGTCGAAGCATCAGGGAATTCTGAGATCAT 1748
|||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1884 CTTAAACATCAACTCAATG-AGTTCAAGAAAGTCGAAGCATCAGGGAATTCTGAGATCAT 1942
Query 1749 GAGACTCCACAAGATGTTGGAAAATGAGACACAGCAAAAAGAAGAACTAGAAGGGGAAAT 1808
||||||||| |||||||||||||||||||| || ||||| ||| ||||||||||||||||
Sbjct 1943 GAGACTCCATAAGATGTTGGAAAATGAGACTCAACAAAAGGAAAAACTAGAAGGGGAAAT 2002
Query 1809 AGCAACACTGCATTCTCAACTACTGCAATTGAGTCTTACTGCTGATGAGACTCGACGAAA 1868
||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2003 AGCGACATTGCATTCTCAACTACTGCAATTGAGTCTTACTGCTGACGAGACTCGACGAAA 2062
Query 1869 CCTTGAGCAACATGGTTCAGAGAAAACTTCTAGTGCTCGAGATTCTTTAATGTCTCAGTT 1928
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2063 CCTTGAGCAACATGGTTCAGAGAAAACTTCTGGTGCTAGAGATTCTTTAATGTCTCAGTT 2122
Query 1929 AAGACTTCCTCAGATCCAAGATCCAGGAAATGCTGAGAAACCTCCTGTAGCTAGATTGTT 1988
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 AAGACTTCCTCAAATCCAAGATCCAGGAAATGCTGAGAAACCTCCTGTAGCTAGATTGTT 2182
Query 1989 TGAACAAGTGGGGTTGCAAAAGATCTTGTCTCTGCTTGAAGCTGAAGATGCTGATGTGAG 2048
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2183 TGAACAAGTGGGGTTGCAAAAGATATTGTCTCTGCTTGAAGCTGAAGATGCTGATGTGAG 2242
Query 2049 GATTCATGCTGTCAAAGTGGTAGCAAATCTGGCTGCCGAAGAGGCAAATCAGCAACAAAT 2108
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2243 GATTCATGCTGTCAAAGTGGTAGCAAATCTGGCTGCCGAAGAGGCAAATCAGCAGCAAAT 2302
Query 2109 TGTGGAAGCTGGTGGTCTCACCTCCTTGTTGATGCTACTGAAGAATACAGAAGATGAGAC 2168
|||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 2303 TGTGGAAGCTGGTGGTCTTACTTCCTTGTTGATGCTTCTGAAAAATACAGAAGATGAGAC 2362
Query 2169 TATTCACAGAGTTGCTGCTGGTGCAATCGCCAATCTTGCAATGAATGAAACTAACCAGGA 2228
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2363 TATTCACAGAGTTGCTGCTGGTGCAATCGCAAATCTTGCAATGAATGAAACCAACCAGGA 2422
Query 2229 GCTGATCATGGATCAAGGAGGCATCGGTTTATTGTCATCAACAGCAGCCAATGCTGAAGA 2288
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2423 GCTGATCATGGATCAAGGAGGCATTGGTTTATTGTCATCAACAGCAGCCAATGCTGAAGA 2482
Query 2289 TCCTCAAACCCTTAGGATGGTTGCTGGAGCAATTGCAAATCTTTGTGGAAACGATAAATT 2348
|||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 2483 TCCTCAGACCCTTAGGATGGTTGCCGGAGCCATTGCAAATCTATGTGGAAACGATAAATT 2542
Query 2349 GCAGACAAAACTAAGATCAGAAGGAGGTATTGCGGCTTTGTTGGGAATGGTGAGATGTGG 2408
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2543 GCAGACAAAACTAAGATCAGAAGGAGGTATTGCAGCTTTGTTGGGAATGGTCAGATGTGG 2602
Query 2409 ACATCCTGATGTTCTTGCACAAGTTGCTCGTGGGATCGCAAACTTTGCGAAATGCGAGTC 2468
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2603 ACATCCTGATGTTCTTGCACAAGTTGCTCGCGGGATCGCAAACTTTGCGAAATGCGAGTC 2662
Query 2469 AAGAGCATCAACAC-A--AGGAACTAAAAGAGGGAAATCACTATTAATAGAAGACGGTGC 2525
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2663 AAGAGCATCAACACAAGCAGGAACTAAAAGAGGGAAATCACTATTAATAGAAGACGGTGC 2722
Query 2526 ACTCTCTTGGATTGTACAAAATGCCAAAACCGAAACCGCAGCCATAAGGCGTCACATTGA 2585
|||||| |||||||||||||| |||||||||||||| |||||||||||| | ||||||||
Sbjct 2723 ACTCTCCTGGATTGTACAAAACGCCAAAACCGAAACTGCAGCCATAAGGAGACACATTGA 2782
Query 2586 ATTAGCTCTTTGTCACTTAGCACAACATGAAGGGAATGCGAAAGAGATGGTGAAGGAAGG 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2783 ATTAGCTCTTTGTCACTTAGCACAACATGAAGGGAATGCGAAAGAGATGGTGAAGGAAGG 2842
Query 2646 AGCAATATGGGAGCTGGTGAGGATCTCAAGAGACTGTTCAAGAGAAGACATAAGATGTCT 2705
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 2843 AGCAATGTGGGAGCTGGTGAGGATCTCAAGAGATTGTTCGAGAGAAGACATAAGAAGTCT 2902
Query 2706 TGCTCATAGAACTCTCACTTCAAGTCCTACTTTTCTCACTGAACTCAGACGTCTCCGTGT 2765
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2903 TGCTCATAGAACTCTCACTTCAAGTCCTACTTTCCTCACTGAACTTAGACGTCTCCGTGT 2962
Query 2766 TGACATCCGGTAAGCCGGTTTAACGCCTAACTTAACCGAACCGAATTGCGGAATAAAGAA 2825
||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2963 TGATATCCGGTAAACCGGTTTAATGCCTAACTTAACCGAACCGAATTGCGGAATAAAGAA 3022
Query 2826 GGATTAAAATATTTTAAAATTCAGTGAGATGAAGAtttgtatgattttgtttttacttat 2885
|| |||| | | ||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 3023 GGGTTAA--T-TC--AAAATTCAGAGAGACGAAGATATGTATGATTTTGTTTTTACTTAT 3077
Query 2886 gtttagg-tt-ttc-----------cgtggctttggcatttctttttgt----GG--TTG 2926
||||||| || || |||||||||||||||||||||| | || |||
Sbjct 3078 GTTTAGGGTTGTTTGTGGGGTTTTTCGTGGCTTTGGCATTTCTTTTTTTTTTTGGGGTTG 3137
Query 2927 GATGTGTATATTATTTTGGTGCGTTTTGTTTGTGTAAATAGGACGTAGTATTGAA 2981
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 3138 GATGTGTATATTATTTTGGTGGGTTTTGTTTGTGTATATAGGACGTAGTATTGAA 3192
Score = 682 bits (369), Expect = 0.0
Identities = 454/494 (92%), Gaps = 10/494 (2%)
Strand=Plus/Plus
Query 1 CTTCACTCAACActctctctctctctcctctctcAATTTTTGCAATTTTCCCGAGAAATT 60
||||||||||| || ||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 6 CTTCACTCAACTCTTTCTCTCTCTCTTCTCTCTAAATTTTTGCAATCTTCCCGAGAAATT 65
Query 61 AAACTCCGTGAAAGAAAGAAAATTAAAGGAATTTTCTCGGGAACTAATAAAATTGAGGAA 120
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 66 AAACTCCGTGAAAGAAA-AAAATTAAAGGAATTTTCTCGGGAACTCATAAAATTGTGGAA 124
Query 121 ACACAAAAGAAGCTTCTTTG-TTTTTGATACTCTCCAAGAGAATTTGTTTGGTCTTTTTT 179
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct 125 ACACAAAAGAAGCTTCTTTGTTTTTTGATACTCTCCCAGAGAATTTGTTTGGTCGTTTTT 184
Query 180 GGATTTATGCG---TTTGAAGAAGAAAAATGTCAACGACTTCAGGAACCGGAGCTTTGAA 236
||||||||||| ||||||| || ||||||||||||||||||||||||||| | | |
Sbjct 185 GGATTTATGCGTTTTTTGAAGTCGAGAAATGTCAACGACTTCAGGAACCGGAGGTGTCAG 244
Query 237 TTACAGAAATGGGACTCAAAGAAGCTCACTCAGAACTCAGTCCTCTACTTCTACTTCCTC 296
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 245 TTACAGAAATGGAACTCAAAGAAGCTCACTCAGAACTCAGTCCTCTGCTTCTACTTCCTC 304
Query 297 CGGTGGTCAGAAATCTTCTGTCAAATCCAAGTCAGTGCTAAGAAAGAGCAGCCCCGCCGC 356
|||||| |||||| |||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 305 CGGTGGCCAGAAAGCTTCTGTCAAATCCAAGTCAGTCCTTAGAAAAAGCAGCCCCGCCGC 364
Query 357 ACTTGGTGGTGGCGGCTCTTCTAAGTCTGGAAGCGGTGGCGACGCCGGTGTTCCTGGGAG 416
|||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 365 ACTTGGTGGTGGTAGCTCT---AAGTCTGGAGGCGGTGGCGACGCCGGTGTTCCTGGAAG 421
Query 417 AGTTCGAGTAGCTGTTAGATTAAG-CCTACGCAATGGTGAGGAATTGATTGCTGATGCTG 475
|||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||| |
Sbjct 422 AGTTCGAGTAGCTGTTAGATTAAGGCC-ACGTAATGGTGAAGAATTGATTGCTGATGCAG 480
Query 476 ATTTTGCTGATTGT 489
||||||||||||||
Sbjct 481 ATTTTGCTGATTGT 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148193149622
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5