BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471394
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12440.1 | Symbols: | A20/AN1-like zinc finger family prote... 1112 0.0
> AT1G12440.1 | Symbols: | A20/AN1-like zinc finger family protein
| chr1:4241592-4243008 REVERSE LENGTH=969
Length=969
Score = 1112 bits (602), Expect = 0.0
Identities = 698/744 (94%), Gaps = 8/744 (1%)
Strand=Plus/Plus
Query 1 TTTCAATTATGGGTTCTGAGCAAAACGACGGCACAAGCTTCTCTCCTTCAGAGCCAAAGC 60
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 231 TTTCCATTATGGGTTCTGAGCAAAACGACAGCACAAGCTTCTCTCCTTCAGAGCCAAAGC 290
Query 61 TCTGCGTCAAAGGATGTGGCTTCTTCGGATCTCCATCGAACATGAACCTCTGCTCCAAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 291 TCTGCGTCAAAGGATGTGGCTTCTTCGGATCTCCATCGAACATGAACCTCTGCTCTAAAT 350
Query 121 GCTACCGAGACATCCGAGCTACGGAGGAACAAACCGCTTCGGCTAAAGCCGCCGTGGAGA 180
||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 351 GCTACAGAGACATCCGAGCCACGGAGGAACAAACCGCTTCCGCTAAAGCCGCCGTCGAGA 410
Query 181 AATCTCTAAACCCTAACAAACCCAAAA-TCCAACCACAACAGAGCCAAGAAACCACTCAA 239
|||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||
Sbjct 411 AATCTCTAAACCCTAATAAACCCAAAACTC-AACCACAACAGAGCCAAGAAATCACTCAA 469
Query 240 GGCGTCCTCGAATCTGGATCTTCTTCCTCATCAACAACGAGCGGTGGTGATTCGGCTGCA 299
|||||||||| ||||||||| |||||||||||||| | ||| || ||||||||||||||
Sbjct 470 GGCGTCCTCGGATCTGGATCGTCTTCCTCATCAACGA-GAG-GG-GGTGATTCGGCTGCT 526
Query 300 GCTCCTTTGGATCCACCGAAATCGACGGCTACGAGATGCTTGAGCTGTAACAAGAAAGTG 359
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GCTCCGTTGGATCCACCGAAATCGACGGCTACGAGATGCTTGAGCTGTAACAAGAAAGTT 586
Query 360 GGCGTGACGGGTTTCAAGTGTAAGTGTGGGAGCACTTTCTGTGGAACTCATAGATATCCA 419
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 587 GGCGTGACGGGTTTCAAGTGTAGGTGTGGAAGCACTTTCTGTGGAACTCATAGATATCCA 646
Query 420 GAGACTCATGAGTGCGAATTCGATTTCAAAGGAGTCGCGAGAGAAGCCATTGCTAAGGCT 479
|||| ||| |||||| ||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 647 GAGAGTCACGAGTGCCAATTCGATTTCAAAGGAGTTGCGAGAGAAGCTATTGCTAAAGCT 706
Query 480 AATCCTGTGGTGAAGGCTGATAAGGTTGAGAGGATATGAATTGGTGAAGAAACTGGTGTG 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 707 AATCCTGTGGTGAAGGCTGATAAGGTTGATAGGATATGAATTGGTGAAGAAACTGTTGTG 766
Query 540 TTCTCTTTGtttttttttATATTAAAGTCTCGTGATGTTGGTGGTTTGGCTCT-T-TTTT 597
|||||||| | ||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 767 TTCTCTTT-TGTTTTTTTATTTTCAAGTCTCGTGATGTTGGTGGTTTGGCTCTCTGTTTT 825
Query 598 CTGCTCTTATTATGGTTTGATTTGCTTTTAGGGTTTCTTAGAAAAGGTTTTCGATTCTGC 657
|||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||
Sbjct 826 CTGCTCTTATTATGGTTTTATTTGCTTTTAGGGTTTCTTAGGAAAGGCCTTAGATTCTGC 885
Query 658 TATTATGTGGTTTCATGATTTGCAACATTGGATTTGTTGTTCTGTAATAAATTGTTGGTC 717
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 886 TATTATGTGGTTTCATGTTTTGCAACATTGGATTTGTTGTTCTGTAATAAAGTGTTGGTT 945
Query 718 ATATCATAAAATTGTGTTCTTATT 741
|||| || ||||||||||||||||
Sbjct 946 ATATTATGAAATTGTGTTCTTATT 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5