BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471395
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12450.1 | Symbols: | SNARE associated Golgi protein family... 1807 0.0
> AT1G12450.1 | Symbols: | SNARE associated Golgi protein family
| chr1:4244308-4245993 FORWARD LENGTH=1285
Length=1285
Score = 1807 bits (978), Expect = 0.0
Identities = 1199/1297 (92%), Gaps = 50/1297 (4%)
Strand=Plus/Plus
Query 1 AAGATTCTTTCTTCTAAACCCATTCGCTCTCTCCGATCACAAACAACCATTTGATCTAAC 60
||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||
Sbjct 2 AAGATTCTTTCTTCTAACCCCATTCGCTCTCTCCGATCA-ACACAA-CATTTGATCTAAC 59
Query 61 GGTTTAATTTTCTCGAGAAACCGAAGG---A-AAACAGAGGTGCACAACGATTCTGCCGG 116
||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||
Sbjct 60 GGTTTAATTTTCTCGAGAAACCGAAGGAAAACAAACAGAGGTGCATAACGATTCTGACGG 119
Query 117 TAACTTTTGAGATA----tttt-------------tt---tttttttGGTTTTATCTTCG 156
||||||||||||| |||| || ||||||||||||||||||||
Sbjct 120 AAACTTTTGAGATATTTTTTTTAGAGCCAAAAGGATTCACTTTTTTTGGTTTTATCTTCG 179
Query 157 TCTCGATCGATCTATGACGTACAGCAATGGCGTCGATGGTACGGTGCCTGAGCTGAAATT 216
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 ---C-ATCGATCTATGACGTACAGCAATGGCGTCGATGGGACGGTGCCTGAGCTGAAATT 235
Query 217 GAGAGTC---GAAGATTCCGAAAATGGTGATTATGTAAAATTGAGAGGAAGATCGGATGA 273
||||||| ||||||||||| |||||||||||| | |||||||||||| |||| ||||
Sbjct 236 GAGAGTCGAAGAAGATTCCGATAATGGTGATTATCTGAAATTGAGAGGAGGATCAAATGA 295
Query 274 AGAAGAAGAAGGATCATCGGCGGAATCATCGGGATGTTCGATAGGATCGGTTACTTCTGT 333
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 296 AGAAGATGAAGGATCATCGGCGGAATCATCGAGATGTCCGATAGGATCGGTTACTTCTGT 355
Query 334 CTGGTTCTGGGTGAAATTGATCTCCTTGGTCGTTTGTTTGGTTTCATTGGCTTTTGTAAT 393
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 356 CTGGTTCTGGGTGAAATTGATCTCCTTGGTCGTTTGTTTGGGTTCATTGGCCTTTGTTAT 415
Query 394 CATCAAATGGATTGGTCCGTTTTTGATCGAAAAGGAGCTGATTCCATTTATAAATTGGGT 453
|||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 416 CATCAAATGGGTTGGTCCCTTTTTGATTGAAAAGGAGCTGATTCCATTTATAAATTGGGT 475
Query 454 GAGAAACACATTCAGCATTCCGGTTCTTGGTCTTCTACTCTTTGCCTCAGTGGCTTTGTT 513
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 476 GAGAAACACATTCAGCATACCGGTTCTCGGTCTTCTACTATTTGCCTCAGTGGCATTGTT 535
Query 514 TCCAAGCATTCTTCTTCCTTCTTCTCCTTCCATGTGGATGGCTGGTCTTACATTTGGTTA 573
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 536 TCCAAGCATTCTTCTTCCTTCTTCCCCTTCCATGTGGATGGCTGGTCTTACATTTGGTTA 595
Query 574 TGGAAAAGGGTTTCTAT-TGATTTTATCAGCAGCATCGATCGGTGTTACTCTTCCTTTCT 632
||||||||||||||| | ||||||||||||| || || ||||||||||||||||||||||
Sbjct 596 TGGAAAAGGGTTTCT-TCTGATTTTATCAGCTGCTTCCATCGGTGTTACTCTTCCTTTCT 654
Query 633 TAATCGGACATCTTTTCCTTCACAAGATGCAAGAATGGTTGAAGAAATACCCGAAAAAAG 692
|||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 655 TAATTGGACATCTCTTCCTCCACAAGATGCAAGAATGGTTGAAGAAATACCCTAAAAAAG 714
Query 693 CAGCCATACTTAGAGCTGCTGGTGAAGGAACCTGGTTTCATCAGTTTCAAGCAGTCACAC 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CAGCCATACTTAGAGCTGCTGGTGAAGGAACCTGGTTTCATCAGTTTCAAGCAGTCACAC 774
Query 753 TAATCCGTGTCTCTCCATTCCCTTACATCATATACAACTACTGCGCATTAGCCACTGGAG 812
||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct 775 TAATCCGTGTCTCTCCATTTCCTTACATCATTTACAACTACTGCGCTTTAGCGACTGGAG 834
Query 813 TTCATTACGGTCCTTACATCTTAGGCTCTCTTGTTGGAATGGTTCCTGAGATCTTTGTCT 872
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTCATTATGGTCCTTATATCTTAGGCTCTCTTGTTGGAATGGTTCCTGAGATCTTTGTCT 894
Query 873 CAATTTACACGGGAATAATGCTAAGGACACTAGCAGTTGCATCAGACACGAGACACACAC 932
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAATTTACACGGGTATAATGCTAAGGACACTAGCAGTTGCATCAGACACGAGACACACAC 954
Query 933 TGTCGGTTGTGGAGATAGTCGTGAATGTTCTTGGCTTCTGTGTAACTGCGAGCGCGACTA 992
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTTCGGTTGTGGAGATAGTCGTGAATGTTCTTGGCTTCTGTGTAACTGCGAGCGCGACTA 1014
Query 993 TAGTCTGCACAATCTATGCGAAGAAGAAGCTAAGTGCGATGCAATCAGAGGACGTAGAGA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TAGTCTGCACAATCTATGCGAAGAAGAAGCTAAGTGCGATGCAATCAGAGGACGTAGAGA 1074
Query 1053 CATTACAAAATCCAATACTTTAATAACTCTTTTCACCAAGACCACAACATACCATC-T-- 1109
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 1075 CATTACAAAATCCAATACTTTATTAACTCTTTTCACCATGACCACAACATACCATCATCT 1134
Query 1110 AACACGATCTTGATATTGATAATATATATAATTTGttttttttttttGTTTTGTTATTCT 1169
||||||||||||| |||||||||||||| | | ||||||||||||| ||| ||||||||
Sbjct 1135 AACACGATCTTGAAATTGATAATATATA-A-T--GTTTTTTTTTTTT-TTT-GTTATTCT 1188
Query 1170 TATTCATTTGAAAGTGAATATCTATGTCTCTTTTCTCTTGTATATATG-TAT----CAAC 1224
||||||||||||| ||||||| ||||||| |||||||||||||||||| ||| |||
Sbjct 1189 TATTCATTTGAAAATGAATATTTATGTCT-TTTTCTCTTGTATATATGATATGTATCAAT 1247
Query 1225 TGAATTTTGAAAATCTCCAATGTATATTTATTAGATC 1261
|||||||||||||| ||||||||||||||||||||||
Sbjct 1248 TGAATTTTGAAAATTTCCAATGTATATTTATTAGATC 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5